public class AlignmentAmbiguityNucleotideCompoundSet extends AmbiguityNoGapNucleotideCompoundSet
AlignmentAmbiguityRNACompoundSet
that also includes the ?
character.Modifier and Type | Field and Description |
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static char |
GAP_CHARACTER |
static char |
UNKNOWN_CHARACTER |
Constructor and Description |
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AlignmentAmbiguityNucleotideCompoundSet()
Returns a new instance of this class.
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Modifier and Type | Method and Description |
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static AlignmentAmbiguityNucleotideCompoundSet |
getAlignmentAmbiguityNucleotideCompoundSet()
Returns a shared instance of this class.
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getAmbiguityNoGapNucleotideCompoundSet
getNoGapNucleotideCompoundSet
addAmbiguityDNACompounds, addAmbiguityDNARNACompounds, addAmbiguityRNACompounds, newNucleotideCompound
addNucleotideCompound, calculateIndirectAmbiguities, getAmbiguity, isComplementable
addCompound, addCompound, addCompound, addEquivalent, compoundsEqual, compoundsEquivalent, equals, getAllCompounds, getCompoundForString, getEquivalentCompounds, getMaxSingleCompoundStringLength, getStringForCompound, hasCompound, hashCode, isCompoundStringLengthEqual, verifySequence
public static final char GAP_CHARACTER
public static final char UNKNOWN_CHARACTER
public AlignmentAmbiguityNucleotideCompoundSet()
public static AlignmentAmbiguityNucleotideCompoundSet getAlignmentAmbiguityNucleotideCompoundSet()