public class RemovedCharSetSequenceView<C extends org.biojava3.core.sequence.template.Compound> extends RemoveSequenceView<C> implements org.biojava3.core.sequence.template.SequenceView<C>
Constructor and Description |
---|
RemovedCharSetSequenceView(org.biojava3.core.sequence.template.Sequence<C> sequence,
java.lang.Integer bioStart,
java.lang.Integer bioEnd,
NonOverlappingIntervalList charSet) |
RemovedCharSetSequenceView(org.biojava3.core.sequence.template.Sequence<C> sequence,
NonOverlappingIntervalList charSet) |
Modifier and Type | Method and Description |
---|---|
protected boolean |
keepPosition(int viewedPos) |
getCompoundAt, getLength, getRemainingPositions
countCompounds, getAccession, getAsList, getBioEnd, getBioStart, getCompoundSet, getIndexOf, getInverse, getLastIndexOf, getSequenceAsString, getSubSequence, getViewedSequence, iterator, setBioEnd, setBioStart
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
getBioEnd, getBioStart, getViewedSequence
public RemovedCharSetSequenceView(org.biojava3.core.sequence.template.Sequence<C> sequence, java.lang.Integer bioStart, java.lang.Integer bioEnd, NonOverlappingIntervalList charSet)
public RemovedCharSetSequenceView(org.biojava3.core.sequence.template.Sequence<C> sequence, NonOverlappingIntervalList charSet)
protected boolean keepPosition(int viewedPos)
keepPosition
in class RemoveSequenceView<C extends org.biojava3.core.sequence.template.Compound>