public class UpperCaseSequenceView<C extends org.biojava3.core.sequence.template.Compound> extends org.biojava3.core.sequence.template.SequenceProxyView<C> implements org.biojava3.core.sequence.template.SequenceView<C>, CountableSequenceView
Constructor and Description |
---|
UpperCaseSequenceView(org.biojava3.core.sequence.template.Sequence<C> sequence,
org.biojava3.core.sequence.template.CompoundSet<? extends C> compoundSet) |
UpperCaseSequenceView(org.biojava3.core.sequence.template.Sequence<C> sequence,
java.lang.Integer bioStart,
java.lang.Integer bioEnd,
org.biojava3.core.sequence.template.CompoundSet<? extends C> compoundSet) |
Modifier and Type | Method and Description |
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int |
countChangedCompounds() |
C |
getCompoundAt(int position) |
countCompounds, getAccession, getAsList, getBioEnd, getBioStart, getCompoundSet, getIndexOf, getInverse, getLastIndexOf, getLength, getSequenceAsString, getSubSequence, getViewedSequence, iterator, setBioEnd, setBioStart
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
getBioEnd, getBioStart, getViewedSequence
public UpperCaseSequenceView(org.biojava3.core.sequence.template.Sequence<C> sequence, java.lang.Integer bioStart, java.lang.Integer bioEnd, org.biojava3.core.sequence.template.CompoundSet<? extends C> compoundSet)
public UpperCaseSequenceView(org.biojava3.core.sequence.template.Sequence<C> sequence, org.biojava3.core.sequence.template.CompoundSet<? extends C> compoundSet)
public C getCompoundAt(int position)
public int countChangedCompounds()
countChangedCompounds
in interface CountableSequenceView