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generateBeans(HttpServletRequest, HttpServletResponse) - Method in class info.bioinfweb.commons.servlet.Model2Servlet
Implementations of this method are called before this servlet delegates to the output JSP.
geraterThan(FormatVersion) - Method in class info.bioinfweb.commons.io.FormatVersion
Returns whether this version is newer than the specified argument.
get(K) - Method in class info.bioinfweb.commons.collections.MultiTreeMap
 
get(long) - Method in class info.bioinfweb.commons.collections.PackedIntegerArrayList
Returns the element stored at the specified index.
get(int) - Method in class info.bioinfweb.commons.collections.PackedObjectArrayList
 
get(int) - Method in class info.bioinfweb.commons.io.IOProgressListenerVector
 
get(Object) - Method in class info.bioinfweb.commons.swing.ActionMap
 
getApplicationLogger() - Method in class info.bioinfweb.commons.log.ApplicationLoggerParameterMap
Returns a stored ApplicationLogger object or a new instance of VoidApplicationLogger if no appropriate object is stored.
getApplyButton() - Method in class info.bioinfweb.commons.swing.OkCancelApplyDialog
This method initializes applyButton
getArg(int) - Method in class info.bioinfweb.commons.CommandLineReader
 
getAscent(Font) - Method in class info.bioinfweb.commons.graphics.FontCalculator
 
getAscentToHeight(String, int, float) - Method in class info.bioinfweb.commons.graphics.FontCalculator
 
getAskToSaveMessageBeginnung() - Method in class info.bioinfweb.commons.swing.SwingSaverMessages
 
getAskToSaveMessageEnd() - Method in class info.bioinfweb.commons.swing.SwingSaverMessages
 
getAskToSaveTitle() - Method in class info.bioinfweb.commons.swing.SwingSaverMessages
 
getAspectRatio(Font, String) - Method in class info.bioinfweb.commons.graphics.FontCalculator
Returns the with of the given text divided by the height.
getBoolean(String, boolean) - Method in class info.bioinfweb.commons.collections.ParameterMap
Checks if a Boolean object is stored under the specified key.
getBooleanParameter(HttpServletRequest, String, boolean) - Static method in class info.bioinfweb.commons.servlet.ServletUtils
 
getBuildNumber() - Method in class info.bioinfweb.commons.appversion.ApplicationVersion
 
getButton() - Method in class info.bioinfweb.commons.tic.input.TICMouseEvent
 
getButtonCancel() - Method in class info.bioinfweb.commons.swing.SwingSaverMessages
 
getButtonNo() - Method in class info.bioinfweb.commons.swing.SwingSaverMessages
 
getButtonsPanel() - Method in class info.bioinfweb.commons.swing.OkCancelApplyDialog
This method initializes buttonPanel
getButtonYes() - Method in class info.bioinfweb.commons.swing.SwingSaverMessages
 
getCancelButton() - Method in class info.bioinfweb.commons.swing.OkCancelApplyDialog
This method initializes cancelButton
getChangeMonitor() - Method in class info.bioinfweb.commons.swing.DecimalInput
 
getClassDir(Class) - Static method in class info.bioinfweb.commons.io.IOUtils
 
getClassLocation(Class) - Static method in class info.bioinfweb.commons.io.IOUtils
Returns either the path to the class file of the specified class without the package path or the path top the archive file that contains it (e.g.
getClickCount() - Method in class info.bioinfweb.commons.tic.input.TICMouseEvent
 
getCollection(K) - Method in class info.bioinfweb.commons.collections.MultiTreeMap
 
getComponentX() - Method in class info.bioinfweb.commons.tic.input.TICMouseEvent
 
getComponentY() - Method in class info.bioinfweb.commons.tic.input.TICMouseEvent
 
getConnection(String, String, String, String, String) - Static method in class info.bioinfweb.commons.sql.SQLConnector
 
getContrastColor(Color, Color, int) - Static method in class info.bioinfweb.commons.graphics.GraphicsUtils
Returns the specified color if it differs enough from the given background color.
getCount() - Method in class info.bioinfweb.commons.io.DefaultNameManager
 
getCountry() - Method in class info.bioinfweb.commons.servlet.acceptlanguage.AcceptLanguageEntry
 
getCurrentDirectory() - Method in class info.bioinfweb.commons.swing.FileChooserDirModel
 
getCurrentToolkit() - Method in class info.bioinfweb.commons.tic.TICComponent
Returns the toolkit the associated toolkit class belongs to.
getDBDriver() - Method in class info.bioinfweb.commons.sql.sqlproperties.ConcreteSQLProperties
 
getDBDriver() - Method in interface info.bioinfweb.commons.sql.sqlproperties.SQLProperties
 
getDBHost() - Method in class info.bioinfweb.commons.sql.sqlproperties.ConcreteSQLProperties
 
getDBHost() - Method in interface info.bioinfweb.commons.sql.sqlproperties.SQLProperties
 
getDBName() - Method in class info.bioinfweb.commons.sql.sqlproperties.ConcreteSQLProperties
 
getDBName() - Method in interface info.bioinfweb.commons.sql.sqlproperties.SQLProperties
 
getDBPassword() - Method in class info.bioinfweb.commons.sql.sqlproperties.ConcreteSQLProperties
 
getDBPassword() - Method in interface info.bioinfweb.commons.sql.sqlproperties.SQLProperties
 
getDBUser() - Method in class info.bioinfweb.commons.sql.sqlproperties.ConcreteSQLProperties
 
getDBUser() - Method in interface info.bioinfweb.commons.sql.sqlproperties.SQLProperties
 
getDecimalFormat() - Method in class info.bioinfweb.commons.swing.DecimalInput
 
getDecimalInput() - Method in class info.bioinfweb.commons.swing.DecimalInputDialog
 
getDefaultExtension() - Method in class info.bioinfweb.commons.io.AbstractSaver
 
getDefaultExtension() - Method in interface info.bioinfweb.commons.io.Savable
The file extension which should be added to file name chosen in the save as dialog, if not one of the allowed ones is already present.
getDefaultLanguage() - Method in class info.bioinfweb.commons.servlet.acceptlanguage.AcceptLanguageRedirectServlet
 
getDefaultName() - Method in class info.bioinfweb.commons.io.AbstractSaver
 
getDefaultName() - Method in interface info.bioinfweb.commons.io.Savable
The path that should be proposed by the saveAs()-method if no path has been assigned.
getDefaultNameOrPath() - Method in class info.bioinfweb.commons.io.AbstractSaver
 
getDefaultNameOrPath() - Method in interface info.bioinfweb.commons.io.Savable
The path of the assigned file or the default name if no file has been specified.
getDescent(Font) - Method in class info.bioinfweb.commons.graphics.FontCalculator
 
getDescentToHeight(String, int, float) - Method in class info.bioinfweb.commons.graphics.FontCalculator
 
getDescription() - Method in class info.bioinfweb.commons.io.InternationalFileFilter
 
getDocument() - Method in class info.bioinfweb.commons.log.SwingDocumentApplicationLogger
 
getDouble(String, double) - Method in class info.bioinfweb.commons.collections.ParameterMap
Checks if a Double object is stored under the specified key.If the stored object has another numeric type, it is converted to double.
getDoubleValue() - Method in class info.bioinfweb.commons.swing.DecimalInputDialog
 
getEdit(int) - Method in class info.bioinfweb.commons.swing.AccessibleUndoManager
 
getElementAt(int) - Method in class info.bioinfweb.commons.swing.LocaleComboBoxModel
 
getFile(String, File) - Method in class info.bioinfweb.commons.collections.ParameterMap
Checks if a File object is stored under the specified key.
getFile(String) - Method in class info.bioinfweb.commons.collections.ParameterMap
Checks if a File object is stored under the specified key.
getFile() - Method in class info.bioinfweb.commons.io.AbstractSaver
 
getFile() - Method in interface info.bioinfweb.commons.io.Savable
Returns the assigned file.
getFileChooser() - Method in interface info.bioinfweb.commons.swing.SwingSavable
 
getFileChooser() - Method in class info.bioinfweb.commons.swing.SwingSaver
 
getFileExtensions() - Method in class info.bioinfweb.commons.io.AbstractSaver
 
getFileExtensions() - Method in interface info.bioinfweb.commons.io.Savable
 
getFillUpChar() - Method in class info.bioinfweb.commons.text.UniqueNameMapParameters
 
getFirstPos(T) - Method in interface info.bioinfweb.commons.collections.SequenceIntervalPositionAdapter
 
getFirstPos() - Method in class info.bioinfweb.commons.collections.SimpleSequenceInterval
 
getFirstPos(SimpleSequenceInterval) - Method in class info.bioinfweb.commons.collections.SimpleSequenceIntervalPositionAdapter
 
getFloat(String, float) - Method in class info.bioinfweb.commons.collections.ParameterMap
Checks if a Float object is stored under the specified key.
getFloatValue() - Method in class info.bioinfweb.commons.swing.DecimalInputDialog
 
getGraphics() - Method in class info.bioinfweb.commons.tic.TICPaintEvent
Returns the graphic context to paint on.
getHeight() - Method in class info.bioinfweb.commons.graphics.DoubleDimension
 
getHeight(Font) - Method in class info.bioinfweb.commons.graphics.FontCalculator
 
getHelpCode() - Method in class info.bioinfweb.commons.log.ApplicationLoggerMessage
 
getIndependentComponent() - Method in class info.bioinfweb.commons.tic.toolkit.AbstractSwingComponent
 
getIndependentComponent() - Method in class info.bioinfweb.commons.tic.toolkit.AbstractSWTWidget
 
getIndependentComponent() - Method in interface info.bioinfweb.commons.tic.toolkit.ToolkitComponent
Returns the TICComponent that is displayed by this GUI element.
getInstance() - Static method in class info.bioinfweb.commons.graphics.FontCalculator
 
getInstance() - Static method in class info.bioinfweb.commons.servlet.acceptlanguage.QualityComparator
 
getInteger(String, int) - Method in class info.bioinfweb.commons.collections.ParameterMap
Checks if a Integer object is stored under the specified key.
getIntervalLength() - Method in class info.bioinfweb.commons.collections.SequenceIntervalList
 
getIntervalStart() - Method in class info.bioinfweb.commons.collections.SequenceIntervalList.IntervalInformation
 
getIntParameter(HttpServletRequest, String, int) - Static method in class info.bioinfweb.commons.servlet.ServletUtils
 
getIntValue() - Method in class info.bioinfweb.commons.swing.DecimalInputDialog
 
getIsSubedit() - Method in class info.bioinfweb.commons.swing.AbstractDocumentEdit
 
getKeyCharacter() - Method in class info.bioinfweb.commons.tic.input.TICKeyEvent
 
getKeyCode() - Method in class info.bioinfweb.commons.tic.input.TICKeyEvent
 
getKeyLocation() - Method in class info.bioinfweb.commons.tic.input.TICKeyEvent
Returns the location of the key that was pressed.
getLabel() - Method in class info.bioinfweb.commons.swing.DecimalInput
 
getLanguage() - Method in class info.bioinfweb.commons.servlet.acceptlanguage.AcceptLanguageEntry
 
getLastPos(T) - Method in interface info.bioinfweb.commons.collections.SequenceIntervalPositionAdapter
 
getLastPos() - Method in class info.bioinfweb.commons.collections.SimpleSequenceInterval
 
getLastPos(SimpleSequenceInterval) - Method in class info.bioinfweb.commons.collections.SimpleSequenceIntervalPositionAdapter
 
getListeners() - Method in class info.bioinfweb.commons.tic.input.TICComponentKeyListenersList
 
getListeners() - Method in class info.bioinfweb.commons.tic.input.TICComponentMouseListenersList
 
getLocaleAt(int) - Method in class info.bioinfweb.commons.swing.LocaleComboBoxModel
 
getLocationInParent() - Method in class info.bioinfweb.commons.tic.TICComponent
Returns the location of this component in the coordinate space of the parent component.
getLoggers() - Method in class info.bioinfweb.commons.log.MultipleApplicationLoggersAdapter
 
getLong(String, long) - Method in class info.bioinfweb.commons.collections.ParameterMap
Checks if a Long object is stored under the specified key.
getLongParameter(HttpServletRequest, String, long) - Static method in class info.bioinfweb.commons.servlet.ServletUtils
 
getLongValue() - Method in class info.bioinfweb.commons.swing.DecimalInputDialog
 
getMajor() - Method in class info.bioinfweb.commons.io.FormatVersion
 
getMajorRelease() - Method in class info.bioinfweb.commons.appversion.ApplicationVersion
 
getMap() - Method in class info.bioinfweb.commons.swing.ActionMap
 
getMap() - Method in class info.bioinfweb.commons.text.UniqueNameMap
 
getMaximumFactor() - Method in class info.bioinfweb.commons.swing.RelativeRangeModel
 
getMaxNameLength() - Method in class info.bioinfweb.commons.text.UniqueNameMapParameters
 
getMaxObjectTypeCount() - Method in class info.bioinfweb.commons.collections.PackedObjectArrayList
Returns the number of different objects this list can manage.
getMaxValue() - Method in class info.bioinfweb.commons.collections.PackedIntegerArrayList
Returns the maximum value that can be represented by an element of this list.
getMessage() - Method in class info.bioinfweb.commons.log.ApplicationLoggerMessage
 
getMinor() - Method in class info.bioinfweb.commons.io.FormatVersion
 
getMinorRelease() - Method in class info.bioinfweb.commons.appversion.ApplicationVersion
 
getMinValue() - Method in class info.bioinfweb.commons.collections.PackedIntegerArrayList
Returns the minimum value that can be represented by an element of this list.
getModifiers() - Method in class info.bioinfweb.commons.tic.input.TICInputEvent
 
getObject(String, Object) - Method in class info.bioinfweb.commons.collections.ParameterMap
Returns the stored object for the key or defaultValue if no object is found.
getOkButton() - Method in class info.bioinfweb.commons.swing.OkCancelApplyDialog
This method initializes okButton
getOutputJSP() - Method in class info.bioinfweb.commons.servlet.Model2Servlet
 
getOverlapList() - Method in class info.bioinfweb.commons.collections.SequenceIntervalList.IntervalInformation
 
getOverlappingElements(int, int) - Method in class info.bioinfweb.commons.collections.NonOverlappingIntervalList
 
getOverlappingElements(int, int) - Method in class info.bioinfweb.commons.collections.SequenceIntervalList
 
getOwner() - Method in class info.bioinfweb.commons.tic.input.TICComponentKeyListenersList
 
getOwner() - Method in class info.bioinfweb.commons.tic.input.TICComponentMouseListenersList
 
getParameters() - Method in class info.bioinfweb.commons.text.UniqueNameMap
 
getPatchLevel() - Method in class info.bioinfweb.commons.appversion.ApplicationVersion
 
getPathPrefix() - Method in class info.bioinfweb.commons.swing.ExtendedAbstractAction
 
getPositionAdapter() - Method in class info.bioinfweb.commons.collections.SequenceIntervalList
 
GetPostServlet - Class in info.bioinfweb.commons.servlet
 
GetPostServlet() - Constructor for class info.bioinfweb.commons.servlet.GetPostServlet
 
GetPostServlet(String) - Constructor for class info.bioinfweb.commons.servlet.GetPostServlet
 
getPreferences() - Method in class info.bioinfweb.commons.ProgramMainClass
Returns the associated preferences object.
getPreferredSize() - Method in class info.bioinfweb.commons.swing.scrollpaneselector.ExtendedScrollPaneSelector
 
getPreferredSize() - Method in class info.bioinfweb.commons.tic.toolkit.DefaultSwingComponent
 
getPrefix() - Method in class info.bioinfweb.commons.io.DefaultNameManager
 
getPrivateMethod(Class<? extends Object>, String, Class...) - Static method in class info.bioinfweb.commons.testing.TestTools
Returns an accessible private method.
getProcessedName(String) - Method in class info.bioinfweb.commons.text.UniqueNameMap
 
getProgressValue() - Method in interface info.bioinfweb.commons.progress.ProgressMonitor
 
getProgressValue() - Method in class info.bioinfweb.commons.progress.VoidProgressMonitor
 
getPropertyName() - Method in class info.bioinfweb.commons.changemonitor.PropertyChangeMonitor
Returns the name of the property this monitor listens to.
getQuality() - Method in class info.bioinfweb.commons.servlet.acceptlanguage.AcceptLanguageEntry
 
getRectangle() - Method in class info.bioinfweb.commons.tic.TICPaintEvent
Returns the rectangle that needs to be repainted.
getRedoEdit(int) - Method in class info.bioinfweb.commons.swing.AccessibleUndoManager
Returns the specified redo edit where the first to be redone has the index 0.
getRedoMenu() - Method in class info.bioinfweb.commons.swing.AbstractUndoActionManagement
 
getRedoPresentationName() - Method in class info.bioinfweb.commons.swing.AbstractDocumentEdit
 
getReplacements() - Method in class info.bioinfweb.commons.text.UniqueNameMapParameters
 
getSelectedItem() - Method in class info.bioinfweb.commons.swing.LocaleComboBoxModel
 
getSelectedLocale() - Method in class info.bioinfweb.commons.swing.LocaleComboBoxModel
 
getSize() - Method in class info.bioinfweb.commons.swing.LocaleComboBoxModel
 
getSize() - Method in class info.bioinfweb.commons.tic.TICComponent
Returns the size this objects uses to be painted completely.
getSource() - Method in class info.bioinfweb.commons.tic.input.TICInputEvent
 
getStartList() - Method in class info.bioinfweb.commons.collections.SequenceIntervalList.IntervalInformation
 
getString(String, String) - Method in class info.bioinfweb.commons.collections.ParameterMap
Checks if an object is stored under the specified key.
getString(String) - Method in class info.bioinfweb.commons.collections.ParameterMap
Checks if an object is stored under the specified key.
getTablePrefix() - Method in class info.bioinfweb.commons.sql.sqlproperties.ConcreteSQLProperties
 
getTablePrefix() - Method in interface info.bioinfweb.commons.sql.sqlproperties.SQLProperties
 
getTextArea() - Method in class info.bioinfweb.commons.log.JTextAreaApplicationLogger
 
getTextField() - Method in class info.bioinfweb.commons.swing.DecimalInput
 
getTime() - Method in class info.bioinfweb.commons.log.ApplicationLoggerMessage
 
getTime() - Method in class info.bioinfweb.commons.tic.input.TICInputEvent
 
getToolkitComponent() - Method in class info.bioinfweb.commons.tic.TICComponent
Returns a toolkit specific component used to display the contents of this class.
getType() - Method in class info.bioinfweb.commons.appversion.ApplicationVersion
 
getType() - Method in class info.bioinfweb.commons.log.ApplicationLoggerMessage
 
getUndoEdit(int) - Method in class info.bioinfweb.commons.swing.AccessibleUndoManager
Returns the specified undo edit where the first to be undone has the index 0.
getUndoManager() - Method in class info.bioinfweb.commons.swing.AbstractUndoActionManagement
 
getUndoMenu() - Method in class info.bioinfweb.commons.swing.AbstractUndoActionManagement
 
getUndoPresentationName() - Method in class info.bioinfweb.commons.swing.AbstractDocumentEdit
 
getURL(String) - Method in class info.bioinfweb.commons.servlet.acceptlanguage.AcceptLanguageRedirectServlet
 
getVersion() - Method in class info.bioinfweb.commons.ProgramMainClass
 
getWidth() - Method in class info.bioinfweb.commons.graphics.DoubleDimension
 
getWidth(Font, String) - Method in class info.bioinfweb.commons.graphics.FontCalculator
 
getWidthToHeigth(String, int, String, float) - Method in class info.bioinfweb.commons.graphics.FontCalculator
 
getWikiHelp() - Method in class info.bioinfweb.commons.swing.JHTMLLabel
 
GraphicsUtils - Class in info.bioinfweb.commons.graphics
Contains method that implement general graphic tasks.
GraphicsUtils() - Constructor for class info.bioinfweb.commons.graphics.GraphicsUtils
 
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