Interface | Description |
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SequenceIntervalPositionAdapter<T> |
Class | Description |
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MultiTreeMap<K,V> |
A tree map that allows to have more than one element for the same key.
|
NonOverlappingIntervalList |
Stores a set of non overlapping intervals of a sequence.
|
PackedIntegerArrayList |
Implements a list of packed integer values which can occupy a space between 1 and 63 bits per value
depending on the specified constructor parameter.
|
PackedObjectArrayList<E> |
Implements a packed list of objects which uses an underlying instance of
PackedIntegerArrayList . |
PackedPrimitiveWrapperArrayList<E extends Number> | |
ParameterMap |
Class that stores different objects by string keys.
|
SequenceIntervalList<E> |
Instances of this class are able to manage a set of sequence intervals (instances of classes implementing
SequenceInterval).
|
SequenceIntervalPositionAdapterForComparable<T extends Comparable<? super T>> |
Abstract implementation of
SequenceIntervalPositionAdapter to be used with elements that already implement the
Comparable interface. |
SimpleSequenceInterval |
Basic implementation representing an interval in a
SequenceIntervalList . |
SimpleSequenceIntervalFirstPosComparator |
Comparator that compare two
SimpleSequenceInterval objects simply by their first (start) position. |
SimpleSequenceIntervalLastPosComparator |
Comparator that compare two
SimpleSequenceInterval objects simply by their last (end) position. |
SimpleSequenceIntervalPositionAdapter |
Implementation of
SequenceIntervalPositionAdapter for SimpleSequenceInterval . |
Enum | Description |
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ListChangeType |
Enumerates the types of basic changes that could be applied to a list or a sequence.
|