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S

Savable - Interface in info.bioinfweb.commons.io
 
save() - Method in class info.bioinfweb.commons.io.AbstractSaver
 
save() - Method in interface info.bioinfweb.commons.io.Savable
This method should save the data to a file defined by the path and should call saveAs() if no path was assigned.
saveAs() - Method in class info.bioinfweb.commons.io.AbstractSaver
 
saveAs() - Method in interface info.bioinfweb.commons.io.Savable
Promts the user der select a path to save the data.
saveAs(Component) - Method in interface info.bioinfweb.commons.swing.SwingSavable
 
saveAs() - Method in class info.bioinfweb.commons.swing.SwingSaver
 
saveAs(Component) - Method in class info.bioinfweb.commons.swing.SwingSaver
 
saveDataToFile(File) - Method in class info.bioinfweb.commons.io.AbstractSaver
 
ScrolledCompositeSyncListener - Class in info.bioinfweb.commons.swt
Selection listener that synchronizes ScrolledComposite components in horizontal or vertical direction.
ScrolledCompositeSyncListener(Collection<ScrolledComposite>, boolean) - Constructor for class info.bioinfweb.commons.swt.ScrolledCompositeSyncListener
Creates a new instance of this class and registers it as selection listeners at the according scroll bars of scrolledComposites.
ScrolledCompositeSyncListener(ScrolledComposite[], boolean) - Constructor for class info.bioinfweb.commons.swt.ScrolledCompositeSyncListener
Creates a new instance of this class.
ScrollPaneSelectable - Interface in info.bioinfweb.commons.swing.scrollpaneselector
Classes implementing this interface are able to paint their own preview thumbnail if they are positioned inside a JScrollPane which uses ExetededScrollPaneSelector.
Although componenets which do not implement this interface can be previewed too, the advantige of is that the component is able to paint a more sharp preview or to highlight special elements.
SequenceIntervalList<E> - Class in info.bioinfweb.commons.collections
Instances of this class are able to manage a set of sequence intervals (instances of classes implementing SequenceInterval).
SequenceIntervalList(SequenceIntervalPositionAdapter<? super E>) - Constructor for class info.bioinfweb.commons.collections.SequenceIntervalList
Equivalent to calling SequenceIntervalList(positionAdapter, SequenceIntervalList.DEFAULT_INITIAL_SEQUENCE_LENGTH, DEFAULT_INTERVAL_LENGTH).
SequenceIntervalList(SequenceIntervalPositionAdapter<? super E>, int, int) - Constructor for class info.bioinfweb.commons.collections.SequenceIntervalList
Creates a new instance of this class.
SequenceIntervalList.IntervalInformation - Class in info.bioinfweb.commons.collections
 
SequenceIntervalList.IntervalInformation(int, Comparator<E>) - Constructor for class info.bioinfweb.commons.collections.SequenceIntervalList.IntervalInformation
 
SequenceIntervalPositionAdapter<T> - Interface in info.bioinfweb.commons.collections
 
SequenceIntervalPositionAdapterForComparable<T extends Comparable<? super T>> - Class in info.bioinfweb.commons.collections
Abstract implementation of SequenceIntervalPositionAdapter to be used with elements that already implement the Comparable interface.
SequenceIntervalPositionAdapterForComparable() - Constructor for class info.bioinfweb.commons.collections.SequenceIntervalPositionAdapterForComparable
 
ServletUtils - Class in info.bioinfweb.commons.servlet
Utility class for common tasks related to servlets.
ServletUtils() - Constructor for class info.bioinfweb.commons.servlet.ServletUtils
 
set(long, long) - Method in class info.bioinfweb.commons.collections.PackedIntegerArrayList
Replaces the value at the specified position with the new value.
set(int, E) - Method in class info.bioinfweb.commons.collections.PackedObjectArrayList
 
set(int, E) - Method in class info.bioinfweb.commons.collections.PackedPrimitiveWrapperArrayList
 
setAskToSaveMessageBeginnung(String) - Method in class info.bioinfweb.commons.swing.SwingSaverMessages
 
setAskToSaveMessageEnd(String) - Method in class info.bioinfweb.commons.swing.SwingSaverMessages
 
setAskToSaveTitle(String) - Method in class info.bioinfweb.commons.swing.SwingSaverMessages
 
setBuildNumber(long) - Method in class info.bioinfweb.commons.appversion.ApplicationVersion
 
setButtonCancel(String) - Method in class info.bioinfweb.commons.swing.SwingSaverMessages
 
setButtonNo(String) - Method in class info.bioinfweb.commons.swing.SwingSaverMessages
 
setButtonYes(String) - Method in class info.bioinfweb.commons.swing.SwingSaverMessages
 
setCountry(String) - Method in class info.bioinfweb.commons.servlet.acceptlanguage.AcceptLanguageEntry
 
setCurrentDirectory(File) - Method in class info.bioinfweb.commons.swing.FileChooserDirModel
 
setDBDriver(String) - Method in class info.bioinfweb.commons.sql.sqlproperties.ConcreteSQLProperties
 
setDBDriver(String) - Method in interface info.bioinfweb.commons.sql.sqlproperties.SQLProperties
 
setDBHost(String) - Method in class info.bioinfweb.commons.sql.sqlproperties.ConcreteSQLProperties
 
setDBHost(String) - Method in interface info.bioinfweb.commons.sql.sqlproperties.SQLProperties
 
setDBName(String) - Method in class info.bioinfweb.commons.sql.sqlproperties.ConcreteSQLProperties
 
setDBName(String) - Method in interface info.bioinfweb.commons.sql.sqlproperties.SQLProperties
 
setDBPassword(String) - Method in class info.bioinfweb.commons.sql.sqlproperties.ConcreteSQLProperties
 
setDBPassword(String) - Method in interface info.bioinfweb.commons.sql.sqlproperties.SQLProperties
 
setDBUser(String) - Method in class info.bioinfweb.commons.sql.sqlproperties.ConcreteSQLProperties
 
setDBUser(String) - Method in interface info.bioinfweb.commons.sql.sqlproperties.SQLProperties
 
setDecimalFormatStr(String) - Method in class info.bioinfweb.commons.swing.DecimalInput
 
setDefaultExtension(String) - Method in class info.bioinfweb.commons.io.AbstractSaver
 
setDefaultExtension(String) - Method in interface info.bioinfweb.commons.io.Savable
 
setDefaultLocale() - Method in class info.bioinfweb.commons.io.InternationalFileFilter
 
setDefaultLocale() - Method in class info.bioinfweb.commons.swing.SwingSaverMessages
 
setDefaultName(String) - Method in class info.bioinfweb.commons.io.AbstractSaver
 
setDefaultName(String) - Method in interface info.bioinfweb.commons.io.Savable
Sets the path that should be proposed by the saveAs()-method if no path has been assigned.
setEnabled(boolean) - Method in class info.bioinfweb.commons.swing.DecimalInput
 
setFile(File) - Method in class info.bioinfweb.commons.io.AbstractSaver
 
setFile(File) - Method in interface info.bioinfweb.commons.io.Savable
Manually assignes a path.
setFillUp(boolean) - Method in class info.bioinfweb.commons.text.UniqueNameMapParameters
 
setFillUpChar(char) - Method in class info.bioinfweb.commons.text.UniqueNameMapParameters
 
setFirstPos(T, int) - Method in interface info.bioinfweb.commons.collections.SequenceIntervalPositionAdapter
 
setFirstPos(int) - Method in class info.bioinfweb.commons.collections.SimpleSequenceInterval
 
setFirstPos(SimpleSequenceInterval, int) - Method in class info.bioinfweb.commons.collections.SimpleSequenceIntervalPositionAdapter
 
setHelpCode(int) - Method in class info.bioinfweb.commons.log.ApplicationLoggerMessage
 
setHTMLContent(String) - Method in class info.bioinfweb.commons.swing.JHTMLLabel
 
setIsSubedit(boolean) - Method in class info.bioinfweb.commons.swing.AbstractDocumentEdit
Indicates whether this edit is independent or part of another edit.
setLanguage(String) - Method in class info.bioinfweb.commons.servlet.acceptlanguage.AcceptLanguageEntry
 
setLastPos(T, int) - Method in interface info.bioinfweb.commons.collections.SequenceIntervalPositionAdapter
 
setLastPos(int) - Method in class info.bioinfweb.commons.collections.SimpleSequenceInterval
 
setLastPos(SimpleSequenceInterval, int) - Method in class info.bioinfweb.commons.collections.SimpleSequenceIntervalPositionAdapter
 
setLocale(Locale) - Method in class info.bioinfweb.commons.io.InternationalFileFilter
 
setLocale(Locale) - Method in class info.bioinfweb.commons.swing.SwingSaverMessages
 
setMajor(int) - Method in class info.bioinfweb.commons.io.FormatVersion
 
setMajorRelease(int) - Method in class info.bioinfweb.commons.appversion.ApplicationVersion
 
setMaximumFactor(double) - Method in class info.bioinfweb.commons.swing.RelativeRangeModel
Sets the current maximum factor and recalculates the maximum.
setMaxNameLength(int) - Method in class info.bioinfweb.commons.text.UniqueNameMapParameters
 
setMessage(String) - Method in class info.bioinfweb.commons.log.ApplicationLoggerMessage
 
setMinor(int) - Method in class info.bioinfweb.commons.io.FormatVersion
 
setMinorRelease(int) - Method in class info.bioinfweb.commons.appversion.ApplicationVersion
 
setPatchLevel(int) - Method in class info.bioinfweb.commons.appversion.ApplicationVersion
 
setPositionAdapter(SequenceIntervalPositionAdapter<? super E>) - Method in class info.bioinfweb.commons.collections.SequenceIntervalList
Calling this methods leads to resorting of all elements in the list.
setPrefix(String) - Method in class info.bioinfweb.commons.io.DefaultNameManager
 
setProgressValue(double) - Method in interface info.bioinfweb.commons.progress.ProgressMonitor
 
setProgressValue(double) - Method in class info.bioinfweb.commons.progress.VoidProgressMonitor
 
setQuality(double) - Method in class info.bioinfweb.commons.servlet.acceptlanguage.AcceptLanguageEntry
 
setSaveCanceled(boolean) - Method in class info.bioinfweb.commons.swing.FileChooserDirModel
If setSaveCanceled(true) is called the current directory is also updated if the user cancels the file chooser dialog.
Default value is true.
setSelectedItem(Object) - Method in class info.bioinfweb.commons.swing.LocaleComboBoxModel
Sets the selected item.
setSelectedLocale(Locale) - Method in class info.bioinfweb.commons.swing.LocaleComboBoxModel
 
setSize(double, double) - Method in class info.bioinfweb.commons.graphics.DoubleDimension
 
setTablePrefix(String) - Method in class info.bioinfweb.commons.sql.sqlproperties.ConcreteSQLProperties
 
setTablePrefix(String) - Method in interface info.bioinfweb.commons.sql.sqlproperties.SQLProperties
 
setText(String) - Method in class info.bioinfweb.commons.swing.JHTMLLabel
 
setTime(Date) - Method in class info.bioinfweb.commons.log.ApplicationLoggerMessage
 
setTime(long) - Method in class info.bioinfweb.commons.log.ApplicationLoggerMessage
 
setTimeToNow() - Method in class info.bioinfweb.commons.log.ApplicationLoggerMessage
 
setType(ApplicationType) - Method in class info.bioinfweb.commons.appversion.ApplicationVersion
 
setType(ApplicationLoggerMessageType) - Method in class info.bioinfweb.commons.log.ApplicationLoggerMessage
 
setValue(float) - Method in class info.bioinfweb.commons.swing.DecimalInput
 
setValue(double) - Method in class info.bioinfweb.commons.swing.DecimalInput
 
setValue(int) - Method in class info.bioinfweb.commons.swing.DecimalInput
 
setValue(long) - Method in class info.bioinfweb.commons.swing.DecimalInput
 
setValue(int) - Method in class info.bioinfweb.commons.swing.RelativeRangeModel
Sets the value of this model.
setWikiHelp(WikiHelp) - Method in class info.bioinfweb.commons.swing.JHTMLLabel
 
SimpleSequenceInterval - Class in info.bioinfweb.commons.collections
Basic implementation representing an interval in a SequenceIntervalList.
SimpleSequenceInterval(int, int) - Constructor for class info.bioinfweb.commons.collections.SimpleSequenceInterval
 
SimpleSequenceIntervalFirstPosComparator - Class in info.bioinfweb.commons.collections
Comparator that compare two SimpleSequenceInterval objects simply by their first (start) position.
SimpleSequenceIntervalFirstPosComparator() - Constructor for class info.bioinfweb.commons.collections.SimpleSequenceIntervalFirstPosComparator
 
SimpleSequenceIntervalLastPosComparator - Class in info.bioinfweb.commons.collections
Comparator that compare two SimpleSequenceInterval objects simply by their last (end) position.
SimpleSequenceIntervalLastPosComparator() - Constructor for class info.bioinfweb.commons.collections.SimpleSequenceIntervalLastPosComparator
 
SimpleSequenceIntervalPositionAdapter - Class in info.bioinfweb.commons.collections
SimpleSequenceIntervalPositionAdapter() - Constructor for class info.bioinfweb.commons.collections.SimpleSequenceIntervalPositionAdapter
 
size() - Method in class info.bioinfweb.commons.collections.MultiTreeMap
 
size(K) - Method in class info.bioinfweb.commons.collections.MultiTreeMap
 
size() - Method in class info.bioinfweb.commons.collections.PackedIntegerArrayList
Returns the number of elements currently contained in this list.
size() - Method in class info.bioinfweb.commons.collections.PackedObjectArrayList
 
size() - Method in class info.bioinfweb.commons.collections.PackedPrimitiveWrapperArrayList
 
size() - Method in class info.bioinfweb.commons.collections.SequenceIntervalList
 
size() - Method in class info.bioinfweb.commons.io.IOProgressListenerVector
 
size() - Method in class info.bioinfweb.commons.swing.ActionMap
 
size() - Method in class info.bioinfweb.commons.text.UniqueNameMap
 
SQL_SET_SEPARATOR - Static variable in class info.bioinfweb.commons.sql.SQLUtils
 
SQLConnector - Class in info.bioinfweb.commons.sql
 
SQLConnector() - Constructor for class info.bioinfweb.commons.sql.SQLConnector
 
SQLProperties - Interface in info.bioinfweb.commons.sql.sqlproperties
Classes implementing this interface provide a bean to store information to connect to a SQL database.
SQLUtils - Class in info.bioinfweb.commons.sql
Utility class for common tasks related to SQL operations.
SQLUtils() - Constructor for class info.bioinfweb.commons.sql.SQLUtils
 
SQLXMLConstants - Interface in info.bioinfweb.commons.sql.sqlproperties
XML constants for the namespace http://bioinfweb.info/xmlns/SQLConnection.
SQLXMLReader - Class in info.bioinfweb.commons.sql.sqlproperties
Reads data necessary to connect to a SQL database.
SQLXMLReader(QName) - Constructor for class info.bioinfweb.commons.sql.sqlproperties.SQLXMLReader
Creates a new instance.
STABLE_STRING - Static variable in enum info.bioinfweb.commons.appversion.ApplicationType
 
stateChanged(ChangeEvent) - Method in class info.bioinfweb.commons.swing.SwingChangeMonitor
 
StringUtils - Class in info.bioinfweb.commons.text
Provides general methods to use with character sequences.
StringUtils() - Constructor for class info.bioinfweb.commons.text.StringUtils
 
subMap(K, boolean, K, boolean) - Method in class info.bioinfweb.commons.collections.MultiTreeMap
 
subMap(K, K) - Method in class info.bioinfweb.commons.collections.MultiTreeMap
 
sum1ToN(int) - Static method in class info.bioinfweb.commons.Math2
Returns the sum of all integers from 1 to the specified value.
SwingChangeMonitor - Class in info.bioinfweb.commons.swing
 
SwingChangeMonitor() - Constructor for class info.bioinfweb.commons.swing.SwingChangeMonitor
 
SwingDocumentApplicationLogger - Class in info.bioinfweb.commons.log
This implementation of ApplicationLogger appends all messages to a Document.
SwingDocumentApplicationLogger(Document) - Constructor for class info.bioinfweb.commons.log.SwingDocumentApplicationLogger
 
SwingSavable - Interface in info.bioinfweb.commons.swing
Interface for a SwingSaver.
SwingSaver - Class in info.bioinfweb.commons.swing
Implements the interface Savable with Swing-Dialogs.
SwingSaver() - Constructor for class info.bioinfweb.commons.swing.SwingSaver
 
SwingSaver(String) - Constructor for class info.bioinfweb.commons.swing.SwingSaver
 
SwingSaverMessages - Class in info.bioinfweb.commons.swing
 
SwingSaverMessages() - Constructor for class info.bioinfweb.commons.swing.SwingSaverMessages
 
SystemUtils - Class in info.bioinfweb.commons
An extension of the apache commons class SystemUtils.
SystemUtils() - Constructor for class info.bioinfweb.commons.SystemUtils
It is unnecessary to create instances of this class.
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