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R

randBigDecimal(BigDecimal, BigDecimal) - Static method in class info.bioinfweb.commons.RandomValues
Returns an equally distributed random BigDecimal value.
randBigInteger(BigInteger, BigInteger) - Static method in class info.bioinfweb.commons.RandomValues
Returns an equally distributed random BigInteger value.
randBigInteger(int) - Static method in class info.bioinfweb.commons.RandomValues
 
randChars(String, int) - Static method in class info.bioinfweb.commons.RandomValues
Generates a string consisting of a random sequence of the specified characters.
randDouble(double, double) - Static method in class info.bioinfweb.commons.RandomValues
Returns an equally distributed random double value.
randFloat(float, float) - Static method in class info.bioinfweb.commons.RandomValues
Returns an equally distributed random float value.
randHexForBits(int) - Static method in class info.bioinfweb.commons.RandomValues
 
randHexForChars(int) - Static method in class info.bioinfweb.commons.RandomValues
Returns the string representation of a random hexadecimal value.
randInt(int, int) - Static method in class info.bioinfweb.commons.RandomValues
Returns an equally distributed random integer value.
randLong(long, long) - Static method in class info.bioinfweb.commons.RandomValues
Returns an equally distributed random long value.
RandomValues - Class in info.bioinfweb.commons
Tool class that offers a set of methods generating random numbers and strings or performing random operations on lists.
RandomValues() - Constructor for class info.bioinfweb.commons.RandomValues
 
RC_STRING - Static variable in enum info.bioinfweb.commons.appversion.ApplicationType
 
reachElementEnd(XMLEventReader) - Static method in class info.bioinfweb.commons.io.XMLUtils
Reads all events from the reader until one more end element than start elements is found.
read(StartElement) - Static method in class info.bioinfweb.commons.appversion.AppVersionXMLReadWrite
Reads an application version object from an XML stream.
read(Reader) - Method in class info.bioinfweb.commons.sql.sqlproperties.SQLXMLReader
 
read(InputStream) - Method in class info.bioinfweb.commons.sql.sqlproperties.SQLXMLReader
 
read(String) - Method in class info.bioinfweb.commons.sql.sqlproperties.SQLXMLReader
 
read(File) - Method in class info.bioinfweb.commons.sql.sqlproperties.SQLXMLReader
 
readBooleanAttr(StartElement, QName, boolean) - Static method in class info.bioinfweb.commons.io.XMLUtils
 
readCharactersAsBoolean(XMLEventReader) - Static method in class info.bioinfweb.commons.io.XMLUtils
Reads the characters from the next event of the stream a parses them as a boolean value.
readCharactersAsDouble(XMLEventReader) - Static method in class info.bioinfweb.commons.io.XMLUtils
Reads the characters from the next event of the stream a parses them as a double value.
readCharactersAsFloat(XMLEventReader) - Static method in class info.bioinfweb.commons.io.XMLUtils
Reads the characters from the next event of the stream a parses them as a float value.
readCharactersAsInt(XMLEventReader) - Static method in class info.bioinfweb.commons.io.XMLUtils
Reads the characters from the next event of the stream a parses them as an int value.
readCharactersAsLong(XMLEventReader) - Static method in class info.bioinfweb.commons.io.XMLUtils
Reads the characters from the next event of the stream a parses them as an long value.
readCharactersAsString(XMLEventReader) - Static method in class info.bioinfweb.commons.io.XMLUtils
Reads the characters from the next event of the stream.
readColorAttr(StartElement, QName, Color) - Static method in class info.bioinfweb.commons.io.XMLUtils
 
readDatabase(XMLEventReader, SQLProperties) - Static method in class info.bioinfweb.commons.sql.sqlproperties.SQLXMLReader
Reads information information about a database connection from a XML-document.
readDoubleAttr(StartElement, QName, double) - Static method in class info.bioinfweb.commons.io.XMLUtils
 
readEnumSet(ResultSet, String, Class<E>) - Static method in class info.bioinfweb.commons.sql.SQLUtils
Reads a value of an SQL SET column into an EnumSet.
readEnumSet(String, Class<E>) - Static method in class info.bioinfweb.commons.sql.SQLUtils
Reads a value of an SQL SET column into an EnumSet.
readFloatAttr(StartElement, QName, float) - Static method in class info.bioinfweb.commons.io.XMLUtils
 
readIntAttr(StartElement, QName, int) - Static method in class info.bioinfweb.commons.io.XMLUtils
 
readIntParamList(HttpServletRequest, String) - Static method in class info.bioinfweb.commons.servlet.ServletUtils
Reads a set of integer values specified by GET or POST parameters.
readRootElement(InputStream) - Static method in class info.bioinfweb.commons.io.XMLUtils
Returns the root element of the XML file that can be read from the specified stream and closes it.
readRootElement(File) - Static method in class info.bioinfweb.commons.io.XMLUtils
 
readStringAttr(StartElement, QName, String) - Static method in class info.bioinfweb.commons.io.XMLUtils
 
readTable(URL, char) - Static method in class info.bioinfweb.commons.io.TableReader
 
readTable(File, char) - Static method in class info.bioinfweb.commons.io.TableReader
 
readTable(InputStream, char) - Static method in class info.bioinfweb.commons.io.TableReader
Reads text data into a two dimensional array with String objects.
readText(URL) - Static method in class info.bioinfweb.commons.io.TextReader
 
readText(File) - Static method in class info.bioinfweb.commons.io.TextReader
 
readText(InputStream) - Static method in class info.bioinfweb.commons.io.TextReader
 
readText(InputStream, int) - Static method in class info.bioinfweb.commons.io.TextReader
 
redo() - Method in class info.bioinfweb.commons.swing.AbstractDocumentEdit
Default implementation that just calls AbstractDocumentEdit.registerDocumentChange() if this edit is not a subedit.
redoCount() - Method in class info.bioinfweb.commons.swing.AccessibleUndoManager
 
redoTo(UndoableEdit) - Method in class info.bioinfweb.commons.swing.AccessibleUndoManager
 
registerChange() - Method in class info.bioinfweb.commons.changemonitor.ChangeMonitor
This method should be called of a change happened.
registerChange() - Method in interface info.bioinfweb.commons.changemonitor.ChangeMonitorable
This method should be called of a change happened.
registerDocumentChange() - Method in class info.bioinfweb.commons.swing.AbstractDocumentEdit
Inheriting classes should e.g.
registerToAll() - Method in class info.bioinfweb.commons.swt.ScrolledCompositeSyncListener
Registers this object as the selection listener at all according scroll bars of the specified ScrolledComposites.
RelativeRangeModel - Class in info.bioinfweb.commons.swing
 
RelativeRangeModel() - Constructor for class info.bioinfweb.commons.swing.RelativeRangeModel
Constructs an instance of this class with a maximum factor of 10.
RelativeRangeModel(int, double) - Constructor for class info.bioinfweb.commons.swing.RelativeRangeModel
 
remove(K, V) - Method in class info.bioinfweb.commons.collections.MultiTreeMap
 
remove(K) - Method in class info.bioinfweb.commons.collections.MultiTreeMap
 
remove(long) - Method in class info.bioinfweb.commons.collections.PackedIntegerArrayList
Removes the element at the specified position from this list.
remove(int) - Method in class info.bioinfweb.commons.collections.PackedObjectArrayList
 
remove(int) - Method in class info.bioinfweb.commons.collections.PackedPrimitiveWrapperArrayList
 
remove(E) - Method in class info.bioinfweb.commons.collections.SequenceIntervalList.IntervalInformation
 
remove(Object) - Method in class info.bioinfweb.commons.collections.SequenceIntervalList
 
remove(IOProgressListener) - Method in class info.bioinfweb.commons.io.IOProgressListenerVector
 
remove(Object) - Method in class info.bioinfweb.commons.swing.ActionMap
 
remove(Object) - Method in class info.bioinfweb.commons.text.UniqueNameMap
 
removeAll(Collection<?>) - Method in class info.bioinfweb.commons.collections.SequenceIntervalList
 
removeApplicationLogger() - Method in class info.bioinfweb.commons.log.ApplicationLoggerParameterMap
 
removeFileChooser(JFileChooser) - Method in class info.bioinfweb.commons.swing.FileChooserDirModel
 
removeFileExtention(String) - Method in class info.bioinfweb.commons.io.AbstractSaver
 
removeFileExtention(String) - Method in interface info.bioinfweb.commons.io.Savable
 
removeKeyListener(TICKeyListener) - Method in class info.bioinfweb.commons.tic.TICComponent
 
removeMouseListener(TICMouseListener) - Method in class info.bioinfweb.commons.tic.TICComponent
 
removeRange(long, long) - Method in class info.bioinfweb.commons.collections.PackedIntegerArrayList
Removes the specified elements from this list.
removeRange(int, int) - Method in class info.bioinfweb.commons.collections.PackedObjectArrayList
 
removeRange(int, int) - Method in class info.bioinfweb.commons.collections.PackedPrimitiveWrapperArrayList
 
removeUpdate(DocumentEvent) - Method in class info.bioinfweb.commons.swing.SwingChangeMonitor
 
renameRepeatedEntries(String[]) - Static method in class info.bioinfweb.commons.text.StringUtils
 
renameRepeatedEntries(List<String>) - Static method in class info.bioinfweb.commons.text.StringUtils
 
repaint() - Method in class info.bioinfweb.commons.tic.TICComponent
Forces the underlying toolkit component to be repainted.
repaint() - Method in class info.bioinfweb.commons.tic.toolkit.AbstractSWTWidget
 
repaint() - Method in interface info.bioinfweb.commons.tic.toolkit.ToolkitComponent
 
repeat(CharSequence, int) - Static method in class info.bioinfweb.commons.text.StringUtils
 
replaceEdit(UndoableEdit) - Method in class info.bioinfweb.commons.swing.AbstractDocumentEdit
 
reset() - Method in class info.bioinfweb.commons.changemonitor.ChangeMonitor
ChangeMonitor.hasChanged() will return false after the call of this method until the next call of ChangeMonitor.registerChange().
reset() - Method in interface info.bioinfweb.commons.changemonitor.ChangeMonitorable
Implementing classes should make sure that ChangeMonitorable.hasChanged() will return false after the call of this method until the next call of ChangeMonitorable.registerChange().
resize(Dimension) - Method in class info.bioinfweb.commons.applet.DoubleBufferedApplet
 
resize(int, int) - Method in class info.bioinfweb.commons.applet.DoubleBufferedApplet
 
retainAll(Collection<?>) - Method in class info.bioinfweb.commons.collections.SequenceIntervalList
 
rgbToGrayColor(Color) - Static method in class info.bioinfweb.commons.graphics.GraphicsUtils
Returns the according gray scale color to the specified color.
rgbToGrayValue(Color) - Static method in class info.bioinfweb.commons.graphics.GraphicsUtils
Returns the according gray scale value to the specified color.
roundBigDecimal(BigDecimal, RoundingMode) - Static method in class info.bioinfweb.commons.Math2
 
roundBigDecimalToBigInteger(BigDecimal, RoundingMode) - Static method in class info.bioinfweb.commons.Math2
 
roundFirstSignificantDigit(double) - Static method in class info.bioinfweb.commons.Math2
Rounds a double value at the given first significant digit.

Examples:
roundSignificantDigit(79.0) would return 80.0 roundSignificantDigit(12.0) would return 10.0 roundSignificantDigit(0.03462) would return 0.03 Calling this method is equivalent to roundSignificantDigit(value, (int)Math.floor(Math.log10(value))).
roundFirstSignificantDigit(float) - Static method in class info.bioinfweb.commons.Math2
Rounds a float value at the given first significant digit.

Examples:
roundSignificantDigit(79.0) would return 80.0 roundSignificantDigit(12.0) would return 10.0 roundSignificantDigit(0.03462) would return 0.03 Calling this method is equivalent to roundSignificantDigit(value, (int)Math.floor(Math.log10(value))).
roundSignificantDigit(double, int) - Static method in class info.bioinfweb.commons.Math2
Rounds a double value at the given significant digit.
roundSignificantDigit(float, int) - Static method in class info.bioinfweb.commons.Math2
Rounds a float value at the given significant digit.

Examples:
roundSignificantDigit(12.4, 0) would return 12 roundSignificantDigit(12.4, 1) would return 10 roundSignificantDigit(0.03462, -3) would return 0.035
roundUp(double) - Static method in class info.bioinfweb.commons.Math2
Returns the next integer value that is greater or equal to the specified value.
roundUp(float) - Static method in class info.bioinfweb.commons.Math2
Returns the next integer value that is greater or equal to the specified value.
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