- calculateArrayLength(long) - Method in class info.bioinfweb.commons.collections.PackedIntegerArrayList
-
Calculates the number of long
array elements necessary to store the specified
number of elements.
- canRedo() - Method in class info.bioinfweb.commons.swing.AbstractDocumentEdit
-
- canUndo() - Method in class info.bioinfweb.commons.swing.AbstractDocumentEdit
-
- cascade(int) - Method in class info.bioinfweb.commons.swing.ExtendedDesktopPane
-
- cascade() - Method in class info.bioinfweb.commons.swing.ExtendedDesktopPane
-
- ceilingEntry(K) - Method in class info.bioinfweb.commons.collections.MultiTreeMap
-
- ceilingKey(K) - Method in class info.bioinfweb.commons.collections.MultiTreeMap
-
- changedUpdate(DocumentEvent) - Method in class info.bioinfweb.commons.swing.SwingChangeMonitor
-
- ChangeMonitor - Class in info.bioinfweb.commons.changemonitor
-
- ChangeMonitor() - Constructor for class info.bioinfweb.commons.changemonitor.ChangeMonitor
-
- ChangeMonitorable - Interface in info.bioinfweb.commons.changemonitor
-
A common interface that can be implemented by classes that track whether they have undergone
changes.
- clear() - Method in class info.bioinfweb.commons.collections.MultiTreeMap
-
- clear() - Method in class info.bioinfweb.commons.collections.SequenceIntervalList
-
- clear() - Method in class info.bioinfweb.commons.collections.SequenceIntervalList.IntervalInformation
-
- clear() - Method in class info.bioinfweb.commons.io.IOProgressListenerVector
-
- clear() - Method in class info.bioinfweb.commons.swing.ActionMap
-
- clear() - Method in class info.bioinfweb.commons.text.UniqueNameMap
-
- clearOffscreeImage() - Method in class info.bioinfweb.commons.applet.DoubleBufferedApplet
-
- clone() - Method in class info.bioinfweb.commons.appversion.ApplicationVersion
-
Returns a new instance if this class having the same version numbers and application type as this instance.
- clone() - Method in class info.bioinfweb.commons.io.FormatVersion
-
- close() - Method in class info.bioinfweb.commons.log.TextFileApplicationLogger
-
- columnAdded(TableColumnModelEvent) - Method in class info.bioinfweb.commons.swing.TableColumnModelAdapter
-
- columnMarginChanged(ChangeEvent) - Method in class info.bioinfweb.commons.swing.TableColumnModelAdapter
-
- columnMoved(TableColumnModelEvent) - Method in class info.bioinfweb.commons.swing.TableColumnModelAdapter
-
- columnRemoved(TableColumnModelEvent) - Method in class info.bioinfweb.commons.swing.TableColumnModelAdapter
-
- columnSelectionChanged(ListSelectionEvent) - Method in class info.bioinfweb.commons.swing.TableColumnModelAdapter
-
- CommandLineReader - Class in info.bioinfweb.commons
-
Tool class that allows to analyze command line arguments that have been passed to an application.
- CommandLineReader(String[]) - Constructor for class info.bioinfweb.commons.CommandLineReader
-
Creates a new instance of this class.
- comparator() - Method in class info.bioinfweb.commons.collections.MultiTreeMap
-
- compare(T, T) - Method in class info.bioinfweb.commons.collections.SequenceIntervalPositionAdapterForComparable
-
- compare(SimpleSequenceInterval, SimpleSequenceInterval) - Method in class info.bioinfweb.commons.collections.SimpleSequenceIntervalFirstPosComparator
-
- compare(SimpleSequenceInterval, SimpleSequenceInterval) - Method in class info.bioinfweb.commons.collections.SimpleSequenceIntervalLastPosComparator
-
- compare(SimpleSequenceInterval, SimpleSequenceInterval) - Method in class info.bioinfweb.commons.collections.SimpleSequenceIntervalPositionAdapter
-
- compare(AcceptLanguageEntry, AcceptLanguageEntry) - Method in class info.bioinfweb.commons.servlet.acceptlanguage.QualityComparator
-
Returns -1 if o1.getQuality()
is less than o2.getQuality()
, 0 is they are
equal and 1 if o1.getQuality()
is greater than o2.getQuality()
.
- compareTo(ApplicationVersion) - Method in class info.bioinfweb.commons.appversion.ApplicationVersion
-
Compares two application versions.
- compareTo(SimpleSequenceInterval) - Method in class info.bioinfweb.commons.collections.SimpleSequenceInterval
-
- compareTo(FormatVersion) - Method in class info.bioinfweb.commons.io.FormatVersion
-
Returns 0 if major and minor version are equal, 1 if this version is later than the specified one and -1 if the
specified version is later.
- concatWithOperator(String, String, String, String, String) - Static method in class info.bioinfweb.commons.text.StringUtils
-
Concatenates two expressions with an operator if both are not empty.
- concatWithOperator(String, String, String) - Static method in class info.bioinfweb.commons.text.StringUtils
-
Concatenates two expressions with an operator if both are not empty.
- ConcreteSQLProperties - Class in info.bioinfweb.commons.sql.sqlproperties
-
- ConcreteSQLProperties() - Constructor for class info.bioinfweb.commons.sql.sqlproperties.ConcreteSQLProperties
-
- contained(String, int, int) - Method in class info.bioinfweb.commons.CommandLineReader
-
Checks if the given value is contained in the arguments and returns the index.
- contained(String, int) - Method in class info.bioinfweb.commons.CommandLineReader
-
Checks if the given value is contained in the arguments and returns the index.
- contained(String) - Method in class info.bioinfweb.commons.CommandLineReader
-
Checks if the given value is contained in the arguments and returns the index.
- contains(int) - Method in class info.bioinfweb.commons.collections.NonOverlappingIntervalList
-
Returns true
if the specified position is marked by this list.
- contains(Object) - Method in class info.bioinfweb.commons.collections.SequenceIntervalList
-
- contains(UndoableEdit) - Method in class info.bioinfweb.commons.swing.AccessibleUndoManager
-
- contains(JFileChooser) - Method in class info.bioinfweb.commons.swing.FileChooserDirModel
-
- containsAll(int, int) - Method in class info.bioinfweb.commons.collections.NonOverlappingIntervalList
-
Returns true
if all positions in the specified interval are marked by this list.
- containsAll(Collection<?>) - Method in class info.bioinfweb.commons.collections.SequenceIntervalList
-
- containsKey(K) - Method in class info.bioinfweb.commons.collections.MultiTreeMap
-
- containsKey(Object) - Method in class info.bioinfweb.commons.text.UniqueNameMap
-
- containsPosition(int) - Method in class info.bioinfweb.commons.collections.SequenceIntervalList
-
- containsRect(Rectangle, Rectangle) - Static method in class info.bioinfweb.commons.Math2
-
Checks if one rectangle is completely contained inside the other.
- containsValue(K, V) - Method in class info.bioinfweb.commons.collections.MultiTreeMap
-
- containsValue(V) - Method in class info.bioinfweb.commons.collections.MultiTreeMap
-
- containsValue(Object) - Method in class info.bioinfweb.commons.text.UniqueNameMap
-
- convertCamelCase(String, String) - Static method in class info.bioinfweb.commons.text.StringUtils
-
Converts a camel case keyword to a string with the specified separator where all characters are in lower case.
Example: anExampleKeyword
would be converted to an-example-keyword
and A
to a
.
- convertSWTEventTime(int) - Static method in class info.bioinfweb.commons.tic.input.TICInputEvent
-
Converts a SWT event time value to a Swing time value.
- convertSWTKeyCode(int) - Static method in class info.bioinfweb.commons.tic.input.TICKeyEvent
-
- convertSWTKeyLocation(int) - Static method in class info.bioinfweb.commons.tic.input.TICKeyEvent
-
- convertSWTStateMask(int, int) - Static method in class info.bioinfweb.commons.tic.input.TICInputEvent
-
- copy(InputStream, OutputStream) - Static method in class info.bioinfweb.commons.io.IOUtils
-
Copies data from an InputStream
to a OutputStream
.
- copy(InputStream, OutputStream, boolean) - Static method in class info.bioinfweb.commons.io.IOUtils
-
- copy(InputStream, OutputStream, IOProgressListener) - Static method in class info.bioinfweb.commons.io.IOUtils
-
- copy(InputStream, OutputStream, boolean, IOProgressListener) - Static method in class info.bioinfweb.commons.io.IOUtils
-
Copies data from an InputStream
to a OutputStream
.
- copy(File, File, IOProgressListener) - Static method in class info.bioinfweb.commons.io.IOUtils
-
Copies a file.
- copy(File, File) - Static method in class info.bioinfweb.commons.io.IOUtils
-
Copies a file.
- copyFromResource(String, OutputStream) - Static method in class info.bioinfweb.commons.io.IOUtils
-
Copies data from an InputStream
to a OutputStream
.
- copyFromResource(String, OutputStream, IOProgressListener) - Static method in class info.bioinfweb.commons.io.IOUtils
-
Copies data from an InputStream
to a OutputStream
.
- createID(Connection, String, String, int, int) - Static method in class info.bioinfweb.commons.sql.IDGenerator
-
Returns a random ID which is not contained in the specified column of the specified
table by the time this method is called.
- createID(Connection, String, String, long, long) - Static method in class info.bioinfweb.commons.sql.IDGenerator
-
Returns a random ID which is not contained in the specified column of the specified
table by the time this method is called.
- createID(Connection, String, String, String, int) - Static method in class info.bioinfweb.commons.sql.IDGenerator
-
Returns a random ID which is not contained in the specified column of the specified
table by the time this method is called.
- createIntListCond(String, List<Integer>, String) - Static method in class info.bioinfweb.commons.sql.SQLUtils
-
- createLabelTable(int, int, double) - Method in class info.bioinfweb.commons.swing.DecimalInput
-
- createNextID(Connection, String, String, boolean, int) - Static method in class info.bioinfweb.commons.sql.IDGenerator
-
Returns the next ID which is not already present in the specified table.
- createNextID(Connection, String, String, boolean, long) - Static method in class info.bioinfweb.commons.sql.IDGenerator
-
Returns the next ID which is not already present in the specified table.
- createRedoAction(UndoableEdit) - Method in class info.bioinfweb.commons.swing.AbstractUndoActionManagement
-
- createSwingComponent() - Method in class info.bioinfweb.commons.tic.TICComponent
-
Creates the Swing component that will be associated with this instance if it was not created before.
- createSWTWidget(Composite, int) - Method in class info.bioinfweb.commons.tic.TICComponent
-
Creates the SWT component that will be associated with this instance if it was not created before.
- createUndoAction(UndoableEdit) - Method in class info.bioinfweb.commons.swing.AbstractUndoActionManagement
-