public class NeedlemanWunschAligner extends Object implements PairwiseAligner
Modifier and Type | Field and Description |
---|---|
static int |
GAP_SCORE |
static int |
MATCH_SCORE |
static int |
MISMATCH_SCORE |
Constructor and Description |
---|
NeedlemanWunschAligner() |
Modifier and Type | Method and Description |
---|---|
CharSequence[] |
align(CharSequence seqA,
CharSequence seqB) |
char |
getGapChar() |
int |
getScore() |
void |
setGapChar(char gapChar) |
public static int MATCH_SCORE
public static int MISMATCH_SCORE
public static int GAP_SCORE
public NeedlemanWunschAligner()
public char getGapChar()
public void setGapChar(char gapChar)
public int getScore()
public CharSequence[] align(CharSequence seqA, CharSequence seqB)
align
in interface PairwiseAligner