info.bioinfweb.commons.bio.biojava3.alignment.io

Interface AlignmentWriter<S extends org.biojava3.core.sequence.template.Sequence<C>,C extends org.biojava3.core.sequence.template.Compound>

All Known Implementing Classes:

AbstractAlignmentWriter, FastaWriter, Hennig86Writer, MEGAWriter, NexusWriter, PhylipWriter

public interface AlignmentWriter<S extends org.biojava3.core.sequence.template.Sequence<C>,C extends org.biojava3.core.sequence.template.Compound>

Method Summary

Modifier and Type	Method and Description
UniqueNameMap	getNameMap()
void	write(Alignment<S,C> alignment, java.io.File file)
void	write(Alignment<S,C> alignment, java.io.OutputStream stream)

Method Detail

write

void write(Alignment<S,C> alignment,
           java.io.OutputStream stream)
    throws java.lang.Exception

Throws:

java.lang.Exception

write

void write(Alignment<S,C> alignment,
           java.io.File file)
    throws java.lang.Exception

Throws:

java.lang.Exception

getNameMap

UniqueNameMap getNameMap()