info.bioinfweb.commons.bio.biojava3.alignment.io.fasta

Class FastaReader<S extends org.biojava3.core.sequence.template.Sequence<C>,C extends org.biojava3.core.sequence.template.Compound>

java.lang.Object

info.bioinfweb.commons.bio.biojava3.alignment.io.AbstractAlignmentReader<S,C>

info.bioinfweb.commons.bio.biojava3.alignment.io.fasta.FastaReader<S,C>

All Implemented Interfaces:

AlignmentReader<S,C>

public class FastaReader<S extends org.biojava3.core.sequence.template.Sequence<C>,C extends org.biojava3.core.sequence.template.Compound>
extends AbstractAlignmentReader<S,C>

Constructor Summary

Constructors

Constructor and Description
FastaReader(org.biojava3.core.sequence.io.template.SequenceCreatorInterface<C> sequenceCreator)

Method Summary

Modifier and Type	Method and Description
Alignment<S,C>	read(java.io.InputStream stream)

Methods inherited from class info.bioinfweb.commons.bio.biojava3.alignment.io.AbstractAlignmentReader

getSequenceCreator, read

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

FastaReader

public FastaReader(org.biojava3.core.sequence.io.template.SequenceCreatorInterface<C> sequenceCreator)

Method Detail

read

public Alignment<S,C> read(java.io.InputStream stream)
                    throws java.lang.Exception

Throws:

java.lang.Exception