See: Description
| Interface | Description |
|---|---|
| SequenceIntervalPositionAdapter<T> |
| Class | Description |
|---|---|
| CollectionUtils | |
| ListDecorator<E> |
Classes that decorate (wrap) a
List can be inherited from this class. |
| ListIteratorDecorator<E> |
Classes that decorate (wrap) a
ListIterator can be inherited from this class. |
| NonOverlappingIntervalList |
Stores a set of non overlapping intervals of a sequence.
|
| NonStoringCollection<E> |
Instances of this class do not store objects add to them.
|
| NumberedStringsIterator |
Implementation of
Iterator that returns strings with defined prefix followed by an integer from a specified range. |
| PackedIntegerArrayList |
Implements a list of packed integer values which can occupy a space between 1 and 63 bits per value
depending on the specified constructor parameter.
|
| PackedObjectArrayList<E> |
Implements a packed list of objects which uses an underlying instance of
PackedIntegerArrayList. |
| PackedPrimitiveWrapperArrayList<E extends java.lang.Number> |
An adapter class providing access to an instance if
PackedIntegerArrayList using the List
interface where the element type can be any numeric primitive wrapper class of the Java API, namely Byte,
Short, Integer or Long. |
| ParameterMap |
Class that stores different objects by string keys.
|
| SequenceIntervalList<E> |
Instances of this class are able to manage a set of sequence intervals.
|
| SequenceIntervalPositionAdapterForComparable<T extends java.lang.Comparable<? super T>> |
Abstract implementation of
SequenceIntervalPositionAdapter to be used with elements that already implement the
Comparable interface. |
| SimpleSequenceInterval |
Basic implementation representing an interval in a
SequenceIntervalList. |
| SimpleSequenceIntervalFirstPosComparator |
Comparator that compare two
SimpleSequenceInterval objects simply by their first (start) position. |
| SimpleSequenceIntervalLastPosComparator |
Comparator that compare two
SimpleSequenceInterval objects simply by their last (end) position. |
| SimpleSequenceIntervalPositionAdapter |
Implementation of
SequenceIntervalPositionAdapter for SimpleSequenceInterval. |
| Enum | Description |
|---|---|
| ListChangeType |
Enumerates the types of basic changes that could be applied to a list or a sequence.
|