| Package | Description |
|---|---|
| info.bioinfweb.commons.bio.biojava3.core.sequence.views | |
| info.bioinfweb.commons.bio.biojavax.bio.phylo.io.nexus | |
| info.bioinfweb.commons.collections |
Contains extensions to the Java Collections API made for bioinfweb projects that can be of general use.
|
| info.bioinfweb.commons.collections.observable |
Contains implementation related to observable collections (e.g.
|
| info.bioinfweb.commons.log |
Classes in this package implement a simple logging API for messages of different types that an application
can output to the user.
|
| Class and Description |
|---|
| NonOverlappingIntervalList
Stores a set of non overlapping intervals of a sequence.
|
| Class and Description |
|---|
| NonOverlappingIntervalList
Stores a set of non overlapping intervals of a sequence.
|
| Class and Description |
|---|
| ListChangeType
Enumerates the types of basic changes that could be applied to a list or a sequence.
|
| NonOverlappingIntervalList
Stores a set of non overlapping intervals of a sequence.
|
| PackedIntegerArrayList
Implements a list of packed integer values which can occupy a space between 1 and 63 bits per value
depending on the specified constructor parameter.
|
| PackedPrimitiveWrapperArrayList
An adapter class providing access to an instance if
PackedIntegerArrayList using the List
interface where the element type can be any numeric primitive wrapper class of the Java API, namely Byte,
Short, Integer or Long. |
| SequenceIntervalPositionAdapter |
| SimpleSequenceInterval
Basic implementation representing an interval in a
SequenceIntervalList. |
| Class and Description |
|---|
| ListChangeType
Enumerates the types of basic changes that could be applied to a list or a sequence.
|
| ListDecorator
Classes that decorate (wrap) a
List can be inherited from this class. |
| Class and Description |
|---|
| ParameterMap
Class that stores different objects by string keys.
|