Constant Field Values

Contents

• info.bioinfweb.*

info.bioinfweb.*

info.bioinfweb.commons.appversion.ApplicationType

Modifier and Type	Constant Field	Value
public static final java.lang.String	ALPHA_STRING	"alpha"
public static final java.lang.String	BETA_STRING	"beta"
public static final java.lang.String	RC_STRING	"release candidate"
public static final java.lang.String	STABLE_STRING	""

info.bioinfweb.commons.bio.AmbiguityBaseScore

Modifier and Type	Constant Field	Value
public static final int	ADENINE_INDEX	0
public static final int	CYTOSINE_INDEX	2
public static final int	GUANINE_INDEX	3
public static final int	THYMINE_INDEX	1

info.bioinfweb.commons.bio.SequenceUtils

Modifier and Type	Constant Field	Value
public static final java.lang.String	ALL_DNA_CHARS	"CGATYRKMBVDHN"
public static final java.lang.String	ALL_RNA_CHARS	"CGAUYRKMBVDHN"
public static final java.lang.String	DNA_CHARS	"CGAT"
public static final char	GAP_CHAR	45
public static final char	MATCH_CHAR	46
public static final char	MISSING_DATA_CHAR	63
public static final java.lang.String	RNA_CHARS	"CGAU"
public static final char	STOP_CODON_CHAR	42

info.bioinfweb.commons.bio.biojava3.alignment.io.AbstractAlignmentWriter<S extends org.biojava3.core.sequence.template.Sequence<C>,C extends org.biojava3.core.sequence.template.Compound>

Modifier and Type	Constant Field	Value
public static final char	WHITESPACE_REPLACEMENT	95

info.bioinfweb.commons.bio.biojava3.alignment.io.fasta.FastaWriter<S extends org.biojava3.core.sequence.template.Sequence<C>,C extends org.biojava3.core.sequence.template.Compound>

Modifier and Type	Constant Field	Value
public static final int	LINE_LENGTH	80

info.bioinfweb.commons.bio.biojava3.alignment.io.hennig86.Hennig86Writer<S extends org.biojava3.core.sequence.template.Sequence<C>,C extends org.biojava3.core.sequence.template.Compound>

Modifier and Type	Constant Field	Value
public static final java.lang.String	COMMAND_TERMINATOR	";"
public static final java.lang.String	DATATYPE_DNA	"dna"
public static final java.lang.String	DATATYPE_PROTEIN	"prot"
public static final java.lang.String	MATRIX_COMMAND	"xread"
public static final java.lang.String	NO_OF_STATES_COMMAND	"nstates"
public static final char	WHITESPACE_REPLACEMENT	95

info.bioinfweb.commons.bio.biojava3.alignment.io.mega.MEGAWriter<S extends org.biojava3.core.sequence.template.Sequence<C>,C extends org.biojava3.core.sequence.template.Compound>

Modifier and Type	Constant Field	Value
public static final java.lang.String	DATATYPE_DNA	"DNA"
public static final java.lang.String	DATATYPE_PROTEIN	"Protein"
public static final char	DEFAULT_GAP_CHAR	45
public static final java.lang.String	DEFAULT_TITLE	"Alignment generated with bioinfweb AlignmentIO"
public static final int	LINE_LENGTH	80

info.bioinfweb.commons.bio.biojava3.alignment.io.nexus.NexusWriter<S extends org.biojava3.core.sequence.template.Sequence<C>,C extends org.biojava3.core.sequence.template.Compound>

Modifier and Type	Constant Field	Value
public static final java.lang.String	COMMAND_TERMINATOR	";"
public static final java.lang.String	COMMENT_END	"]"
public static final java.lang.String	COMMENT_START	"["
public static final java.lang.String	DATATYPE_CONTINUOUS	"CONTINUOUS"
public static final java.lang.String	DATATYPE_DNA	"DNA"
public static final java.lang.String	DATATYPE_NUCLEOTIDE	"NUCLEOTIDE"
public static final java.lang.String	DATATYPE_PROTEIN	"PROTEIN"
public static final java.lang.String	DATATYPE_RNA	"RNA"
public static final java.lang.String	DATATYPE_STANDARD	"STANDARD"

info.bioinfweb.commons.bio.biojava3.alignment.io.phylip.PhylipWriter<S extends org.biojava3.core.sequence.template.Sequence<C>,C extends org.biojava3.core.sequence.template.Compound>

Modifier and Type	Constant Field	Value
public static final int	DEFAULT_MAX_NAME_LENGTH	10

info.bioinfweb.commons.bio.biojava3.core.sequence.compound.AlignmentAmbiguityNucleotideCompoundSet

Modifier and Type	Constant Field	Value
public static final char	GAP_CHARACTER	45
public static final char	UNKNOWN_CHARACTER	63

info.bioinfweb.commons.bio.biojavax.bio.phylo.io.nexus.SetsBlock

Modifier and Type	Constant Field	Value
public static final java.lang.String	SETS_BLOCK	"SETS"

info.bioinfweb.commons.bio.biojavax.bio.phylo.io.nexus.SetsBlockParser

Modifier and Type	Constant Field	Value
public static final java.lang.String	SETS_LIST_START	"="
public static final java.lang.String	START_END_SEPARATER	"-"

info.bioinfweb.commons.collections.PackedIntegerArrayList

Modifier and Type	Constant Field	Value
public static final int	BLOCK_BITS	6
public static final int	BLOCK_SIZE	64
public static final int	MAX_ARRAY_LENGTH	2147483639
public static final int	MOD_MASK	63

info.bioinfweb.commons.collections.SequenceIntervalList<E>

Modifier and Type	Constant Field	Value
public static final int	DEFAULT_INITIAL_SEQUENCE_LENGTH	5000
public static final int	DEFAULT_INTERVAL_LENGTH	50

info.bioinfweb.commons.io.ExtensionFileFilter

Modifier and Type	Constant Field	Value
public static final char	EXTENSION_SEPARATOR	46

info.bioinfweb.commons.io.IOUtils

Modifier and Type	Constant Field	Value
public static final int	EOF	-1

info.bioinfweb.commons.io.PeekReader

Modifier and Type	Constant Field	Value
public static final int	DEFAULT_PEEK_BUFFER_SIZE	8192

info.bioinfweb.commons.io.XMLUtils

Modifier and Type	Constant Field	Value
public static final java.lang.String	ATTR_SCHEMA_LOCATION	"xsi:schemaLocation"
public static final java.lang.String	ATTR_SCHEMA_LOCATION_LOCAL_PART	"schemaLocation"
public static final java.lang.String	ATTR_XSI_NAMESPACE	"xmlns:xsi"
public static final java.lang.String	QNAME_SEPARATOR	":"

info.bioinfweb.commons.log.ApplicationLoggerMessage

Modifier and Type	Constant Field	Value
public static final int	NO_HELP_CODE	-1

info.bioinfweb.commons.log.ApplicationLoggerParameterMap

Modifier and Type	Constant Field	Value
public static final java.lang.String	KEY_APPLICATION_LOGGER	"info.bioinfweb.commons.log.ApplicationLogger_ApplicationLoggerParameterMap"

info.bioinfweb.commons.servlet.CaptchaDBManagement

Modifier and Type	Constant Field	Value
public static final java.lang.String	NAME_CODE_COLUMN	"code"
public static final java.lang.String	NAME_FONT_NAME	"name"
public static final java.lang.String	NAME_ID_COLUMN	"id"

info.bioinfweb.commons.servlet.GetPostServlet

Modifier and Type	Constant Field	Value
public static final java.lang.String	DEFAULT_CONTENT_TYPE	"text/html"

info.bioinfweb.commons.servlet.HTTPIncludeServlet

Modifier and Type	Constant Field	Value
public static final java.lang.String	PARAM_TARGET_URL	"targetURL"

info.bioinfweb.commons.servlet.Model2Servlet

Modifier and Type	Constant Field	Value
public static final java.lang.String	PARAM_OUTPUT_JSP	"outputJSP"

info.bioinfweb.commons.servlet.SQLManipulator

Modifier and Type	Constant Field	Value
public static final java.lang.String	MYSQL_DRIVER	"com.mysql.jdbc.Driver"

info.bioinfweb.commons.servlet.acceptlanguage.AcceptLanguageEntry

Modifier and Type	Constant Field	Value
public static final java.lang.String	DEFAULT_COUNTRY	"*"
public static final double	DEFAULT_QUALITY	1.0

info.bioinfweb.commons.servlet.acceptlanguage.AcceptLanguageParser

Modifier and Type	Constant Field	Value
public static final java.lang.String	HEADER_NAME	"Accept-Language"

info.bioinfweb.commons.sql.SQLConnector

Modifier and Type	Constant Field	Value
public static final java.lang.String	MYSQL_DRIVER	"com.mysql.jdbc.Driver"

info.bioinfweb.commons.sql.SQLUtils

Modifier and Type	Constant Field	Value
public static final java.lang.String	SQL_SET_SEPARATOR	","

info.bioinfweb.commons.sql.sqlproperties.SQLXMLConstants

Modifier and Type	Constant Field	Value
public static final java.lang.String	NAMESPACE_URI	"http://bioinfweb.info/xmlns/SQLConnection"

info.bioinfweb.commons.swing.DecimalInput

Modifier and Type	Constant Field	Value
public static final java.lang.String	DOUBLE_FORMAT	"#.##########"
public static final java.lang.String	FLOAT_FORMAT	"#.#######"
public static final java.lang.String	INTEGER_FORMAT	"#"

info.bioinfweb.commons.swing.SwingSaverMessages

Modifier and Type	Constant Field	Value
public static final java.lang.String	DE_ASK_TO_SAVE_MESSAGE_BEGINNING	"M\u00f6chten Sie \u00c4nderungen an "
public static final java.lang.String	DE_ASK_TO_SAVE_MESSAGE_END	" speichern?"
public static final java.lang.String	DE_ASK_TO_SAVE_TITLE	"\u00c4nderungen"
public static final java.lang.String	DE_BUTTON_CANCEL	"Abbrechen"
public static final java.lang.String	DE_BUTTON_NO	"Nein"
public static final java.lang.String	DE_BUTTON_YES	"Ja"
public static final java.lang.String	EN_ASK_TO_SAVE_MESSAGE_BEGINNING	"Do you want to save changes in "
public static final java.lang.String	EN_ASK_TO_SAVE_MESSAGE_END	"?"
public static final java.lang.String	EN_ASK_TO_SAVE_TITLE	"Document has changed"
public static final java.lang.String	EN_BUTTON_CANCEL	"Cancel"
public static final java.lang.String	EN_BUTTON_NO	"No"
public static final java.lang.String	EN_BUTTON_YES	"Yes"

info.bioinfweb.commons.text.UniqueNameMapParameters

Modifier and Type	Constant Field	Value
public static final char	DEFAULT_FILL_UP_CHAR	32