Hierarchy For All Packages

Package Hierarchies:

• info.bioinfweb.commons,
• info.bioinfweb.commons.applet,
• info.bioinfweb.commons.appversion,
• info.bioinfweb.commons.beans,
• info.bioinfweb.commons.bio,
• info.bioinfweb.commons.bio.alignment.pairwise,
• info.bioinfweb.commons.bio.biojava3.alignment,
• info.bioinfweb.commons.bio.biojava3.alignment.io,
• info.bioinfweb.commons.bio.biojava3.alignment.io.fasta,
• info.bioinfweb.commons.bio.biojava3.alignment.io.hennig86,
• info.bioinfweb.commons.bio.biojava3.alignment.io.mega,
• info.bioinfweb.commons.bio.biojava3.alignment.io.nexus,
• info.bioinfweb.commons.bio.biojava3.alignment.io.phylip,
• info.bioinfweb.commons.bio.biojava3.alignment.template,
• info.bioinfweb.commons.bio.biojava3.core.sequence,
• info.bioinfweb.commons.bio.biojava3.core.sequence.compound,
• info.bioinfweb.commons.bio.biojava3.core.sequence.io,
• info.bioinfweb.commons.bio.biojava3.core.sequence.template,
• info.bioinfweb.commons.bio.biojava3.core.sequence.views,
• info.bioinfweb.commons.bio.biojavax.bio.phylo.io.nexus,
• info.bioinfweb.commons.changemonitor,
• info.bioinfweb.commons.collections,
• info.bioinfweb.commons.collections.bitstorage,
• info.bioinfweb.commons.collections.bitstorage.exception,
• info.bioinfweb.commons.collections.observable,
• info.bioinfweb.commons.events,
• info.bioinfweb.commons.graphics,
• info.bioinfweb.commons.io,
• info.bioinfweb.commons.io.streammessage,
• info.bioinfweb.commons.log,
• info.bioinfweb.commons.progress,
• info.bioinfweb.commons.servlet,
• info.bioinfweb.commons.servlet.acceptlanguage,
• info.bioinfweb.commons.sql,
• info.bioinfweb.commons.sql.sqlproperties,
• info.bioinfweb.commons.swing,
• info.bioinfweb.commons.swing.actions,
• info.bioinfweb.commons.swing.scrollpaneselector,
• info.bioinfweb.commons.swt,
• info.bioinfweb.commons.testing,
• info.bioinfweb.commons.text,
• info.bioinfweb.commons.tokenizer,
• org.jdesktop.swingx.scrollpaneselector

Class Hierarchy

• java.lang.Object
  • javax.swing.AbstractAction (implements javax.swing.Action, java.lang.Cloneable, java.io.Serializable)
    • info.bioinfweb.commons.swing.ExtendedAbstractAction
      • info.bioinfweb.commons.swing.actions.OpenWebsiteAction
        • info.bioinfweb.commons.swing.actions.BioinfwebMainPageAction
        • info.bioinfweb.commons.swing.actions.TwitterAction
  • info.bioinfweb.commons.bio.biojava3.alignment.io.AbstractAlignmentReader<S,C> (implements info.bioinfweb.commons.bio.biojava3.alignment.io.AlignmentReader<S,C>)
    • info.bioinfweb.commons.bio.biojava3.alignment.io.fasta.FastaReader<S,C>
    • info.bioinfweb.commons.bio.biojava3.alignment.io.nexus.NexusReader<S,C>
  • info.bioinfweb.commons.bio.biojava3.alignment.io.AbstractAlignmentWriter<S,C> (implements info.bioinfweb.commons.bio.biojava3.alignment.io.AlignmentWriter<S,C>)
    • info.bioinfweb.commons.bio.biojava3.alignment.io.fasta.FastaWriter<S,C>
    • info.bioinfweb.commons.bio.biojava3.alignment.io.hennig86.Hennig86Writer<S,C>
    • info.bioinfweb.commons.bio.biojava3.alignment.io.mega.MEGAWriter<S,C>
    • info.bioinfweb.commons.bio.biojava3.alignment.io.nexus.NexusWriter<S,C>
    • info.bioinfweb.commons.bio.biojava3.alignment.io.phylip.PhylipWriter<S,C>
  • info.bioinfweb.commons.log.AbstractApplicationLogger (implements info.bioinfweb.commons.log.ApplicationLogger)
    • info.bioinfweb.commons.log.ConsoleApplicationLogger
    • info.bioinfweb.commons.log.JTextAreaApplicationLogger
    • info.bioinfweb.commons.log.MessageListApplicationLogger
    • info.bioinfweb.commons.log.SwingDocumentApplicationLogger
    • info.bioinfweb.commons.log.TextFileApplicationLogger (implements java.io.Closeable, java.io.Flushable)
  • java.util.AbstractCollection<E> (implements java.util.Collection<E>)
    • java.util.AbstractList<E> (implements java.util.List<E>)
      • info.bioinfweb.commons.collections.PackedObjectArrayList<E> (implements java.util.List<E>)
      • info.bioinfweb.commons.collections.PackedPrimitiveWrapperArrayList<E>
    • java.util.AbstractSet<E> (implements java.util.Set<E>)
      • java.util.TreeSet<E> (implements java.lang.Cloneable, java.util.NavigableSet<E>, java.io.Serializable)
        • info.bioinfweb.commons.collections.NonOverlappingIntervalList
          • info.bioinfweb.commons.bio.biojavax.bio.phylo.io.nexus.CharSet
  • org.biojava3.core.sequence.template.AbstractCompoundSet<C> (implements org.biojava3.core.sequence.template.CompoundSet<C>)
    • org.biojava3.core.sequence.template.AbstractNucleotideCompoundSet<C>
      • info.bioinfweb.commons.bio.biojava3.core.sequence.template.AbstractNucleotideCompoundSet2
        • info.bioinfweb.commons.bio.biojava3.core.sequence.compound.NoGapDNACompoundSet
          • info.bioinfweb.commons.bio.biojava3.core.sequence.compound.AmbiguityNoGapDNACompoundSet
            • info.bioinfweb.commons.bio.biojava3.core.sequence.compound.AlignmentAmbiguityDNACompoundSet
          • info.bioinfweb.commons.bio.biojava3.core.sequence.compound.AmbiguityNoGapRNACompoundSet
            • info.bioinfweb.commons.bio.biojava3.core.sequence.compound.AlignmentAmbiguityRNACompoundSet
        • info.bioinfweb.commons.bio.biojava3.core.sequence.compound.NoGapNucleotideCompoundSet
          • info.bioinfweb.commons.bio.biojava3.core.sequence.compound.AmbiguityNoGapNucleotideCompoundSet
            • info.bioinfweb.commons.bio.biojava3.core.sequence.compound.AlignmentAmbiguityNucleotideCompoundSet
        • info.bioinfweb.commons.bio.biojava3.core.sequence.compound.NoGapRNACompoundSet
        • info.bioinfweb.commons.bio.biojava3.core.sequence.compound.NucleotideCompoundSet
  • info.bioinfweb.commons.swing.AbstractDocumentEdit (implements javax.swing.undo.UndoableEdit)
  • info.bioinfweb.commons.collections.bitstorage.AbstractIntegerBitList<N> (implements java.util.List<E>)
  • javax.swing.AbstractListModel<E> (implements javax.swing.ListModel<E>, java.io.Serializable)
    • info.bioinfweb.commons.swing.ListBackedListModel<E>
      • info.bioinfweb.commons.swing.ListBackedComboBoxModel<E> (implements javax.swing.ComboBoxModel<E>)
    • info.bioinfweb.commons.swing.LocaleComboBoxModel (implements javax.swing.ComboBoxModel<E>)
  • java.util.AbstractMap<K,V> (implements java.util.Map<K,V>)
    • java.util.TreeMap<K,V> (implements java.lang.Cloneable, java.util.NavigableMap<K,V>, java.io.Serializable)
      • info.bioinfweb.commons.collections.ParameterMap
        • info.bioinfweb.commons.log.ApplicationLoggerParameterMap
  • info.bioinfweb.commons.progress.AbstractProgressMonitor (implements info.bioinfweb.commons.progress.ProgressMonitor)
    • info.bioinfweb.commons.progress.VoidProgressMonitor (implements info.bioinfweb.commons.progress.ProgressMonitor)
  • javax.swing.undo.AbstractUndoableEdit (implements java.io.Serializable, javax.swing.undo.UndoableEdit)
    • javax.swing.undo.CompoundEdit
      • javax.swing.undo.UndoManager (implements javax.swing.event.UndoableEditListener)
        • info.bioinfweb.commons.swing.AccessibleUndoManager
  • info.bioinfweb.commons.servlet.acceptlanguage.AcceptLanguageEntry
  • info.bioinfweb.commons.servlet.acceptlanguage.AcceptLanguageParser
  • info.bioinfweb.commons.swing.ActionMap
    • info.bioinfweb.commons.swing.AbstractUndoActionManagement
  • info.bioinfweb.commons.graphics.AlphaImageAssembler
  • info.bioinfweb.commons.bio.AmbiguityBaseScore (implements java.lang.Cloneable, java.lang.Comparable<T>)
  • info.bioinfweb.commons.log.ApplicationLoggerMessage
  • info.bioinfweb.commons.appversion.ApplicationVersion (implements java.lang.Cloneable, java.lang.Comparable<T>)
  • info.bioinfweb.commons.appversion.AppVersionXMLConstants
    • info.bioinfweb.commons.appversion.AppVersionXMLReadWrite
  • info.bioinfweb.commons.testing.Assert2
  • info.bioinfweb.commons.bio.biojava3.core.sequence.BioJava1SymbolTranslator
  • info.bioinfweb.commons.servlet.CaptchaDBManagement
  • info.bioinfweb.commons.changemonitor.ChangeMonitor (implements info.bioinfweb.commons.changemonitor.ChangeMonitorable)
    • info.bioinfweb.commons.io.AbstractSaver (implements info.bioinfweb.commons.changemonitor.ChangeMonitorable, info.bioinfweb.commons.io.Savable)
      • info.bioinfweb.commons.swing.SwingSaver (implements info.bioinfweb.commons.changemonitor.ChangeMonitorable, info.bioinfweb.commons.io.Savable)
    • info.bioinfweb.commons.changemonitor.PropertyChangeMonitor (implements java.beans.PropertyChangeListener)
    • info.bioinfweb.commons.swing.SwingChangeMonitor (implements javax.swing.event.ChangeListener, javax.swing.event.DocumentListener, java.awt.event.ItemListener)
  • info.bioinfweb.commons.collections.CollectionUtils
  • info.bioinfweb.commons.CommandLineReader
  • java.awt.Component (implements java.awt.image.ImageObserver, java.awt.MenuContainer, java.io.Serializable)
    • java.awt.Container
      • javax.swing.JComponent (implements java.io.Serializable)
        • info.bioinfweb.commons.swing.scrollpaneselector.ExtendedScrollPaneSelector
        • javax.swing.JLayeredPane (implements javax.accessibility.Accessible)
          • javax.swing.JDesktopPane (implements javax.accessibility.Accessible)
            • info.bioinfweb.commons.swing.ExtendedDesktopPane
        • javax.swing.JPanel (implements javax.accessibility.Accessible)
          • info.bioinfweb.commons.swing.JDropDownSpinner<I>
        • org.jdesktop.swingx.scrollpaneselector.ScrollPaneBidule
        • org.jdesktop.swingx.scrollpaneselector.ScrollPaneSelector
      • java.awt.Panel (implements javax.accessibility.Accessible)
        • java.applet.Applet
          • info.bioinfweb.commons.applet.DoubleBufferedApplet
      • java.awt.Window (implements javax.accessibility.Accessible)
        • java.awt.Dialog
          • javax.swing.JDialog (implements javax.accessibility.Accessible, javax.swing.RootPaneContainer, javax.swing.WindowConstants)
            • info.bioinfweb.commons.swing.AboutDialog
            • info.bioinfweb.commons.log.ApplicationLoggerDialog (implements info.bioinfweb.commons.log.ApplicationLogger)
            • info.bioinfweb.commons.swing.OkCancelApplyDialog
              • info.bioinfweb.commons.swing.DecimalInputDialog
              • info.bioinfweb.commons.swing.OkCancelApplyHelpDialog
            • info.bioinfweb.commons.swing.ProgressDialog (implements info.bioinfweb.commons.progress.ProgressMonitor)
            • info.bioinfweb.commons.swing.ToolBarPopup
  • info.bioinfweb.commons.bio.biojava3.core.sequence.views.ConcatenatedSequenceView<C> (implements org.biojava3.core.sequence.template.SequenceView<C>)
  • info.bioinfweb.commons.bio.biojava3.core.sequence.views.ConcatenatedSequenceView.ViewedSequence
  • info.bioinfweb.commons.sql.sqlproperties.ConcreteSQLProperties (implements info.bioinfweb.commons.sql.sqlproperties.SQLProperties)
  • info.bioinfweb.commons.bio.ConsensusSequenceCreator
  • info.bioinfweb.commons.servlet.CookieManager
  • info.bioinfweb.commons.swing.DecimalInput
  • javax.swing.DefaultBoundedRangeModel (implements javax.swing.BoundedRangeModel, java.io.Serializable)
    • info.bioinfweb.commons.swing.RelativeRangeModel (implements javax.swing.BoundedRangeModel)
  • info.bioinfweb.commons.io.DefaultNameManager
  • java.awt.geom.Dimension2D (implements java.lang.Cloneable)
    • info.bioinfweb.commons.graphics.DoubleDimension
  • java.util.EventObject (implements java.io.Serializable)
    • javax.swing.event.ChangeEvent
      • info.bioinfweb.commons.events.GenericChangeEvent<S>
    • info.bioinfweb.commons.events.GenericEventObject<S>
    • info.bioinfweb.commons.collections.observable.ListChangeEvent<E>
      • info.bioinfweb.commons.collections.observable.ListMultipleChangesEvent<E>
        • info.bioinfweb.commons.collections.observable.ListAddEvent<E>
      • info.bioinfweb.commons.collections.observable.ListRemoveEvent<L,E>
      • info.bioinfweb.commons.collections.observable.ListReplaceEvent<E>
  • info.bioinfweb.commons.bio.biojava3.core.sequence.io.FastaReaderTools
  • info.bioinfweb.commons.swing.FileChooserDirModel
  • javax.swing.filechooser.FileFilter
    • info.bioinfweb.commons.io.ExtensionFileFilter (implements java.io.FileFilter, java.io.FilenameFilter)
      • info.bioinfweb.commons.io.ContentExtensionFileFilter
    • info.bioinfweb.commons.io.InternationalFileFilter
  • java.awt.FlowLayout (implements java.awt.LayoutManager, java.io.Serializable)
    • info.bioinfweb.commons.swing.WrapLayout
  • info.bioinfweb.commons.graphics.FontCalculator
  • info.bioinfweb.commons.io.FormatVersion (implements java.lang.Cloneable, java.lang.Comparable<T>)
  • javax.servlet.GenericServlet (implements java.io.Serializable, javax.servlet.Servlet, javax.servlet.ServletConfig)
    • javax.servlet.http.HttpServlet
      • info.bioinfweb.commons.servlet.GetPostServlet
        • info.bioinfweb.commons.servlet.acceptlanguage.AcceptLanguageRedirectServlet
        • info.bioinfweb.commons.servlet.HTTPIncludeServlet
        • info.bioinfweb.commons.servlet.Model2Servlet
  • info.bioinfweb.commons.graphics.GraphicsUtils
  • info.bioinfweb.commons.HTMLTruncater
  • info.bioinfweb.commons.sql.IDGenerator
  • info.bioinfweb.commons.graphics.ImageRescaler
  • java.io.InputStream (implements java.io.Closeable)
    • info.bioinfweb.commons.io.LimitedInputStream
  • info.bioinfweb.commons.IntegerIDManager
  • info.bioinfweb.commons.io.IOProgressListenerAdapter (implements info.bioinfweb.commons.io.IOProgressListener)
  • info.bioinfweb.commons.io.IOProgressListenerVector (implements info.bioinfweb.commons.io.IOProgressListener)
  • info.bioinfweb.commons.io.IOUtils
  • info.bioinfweb.commons.collections.observable.ListChangeAdapter<E> (implements info.bioinfweb.commons.collections.observable.ListChangeListener<E>)
  • info.bioinfweb.commons.collections.ListDecorator<E> (implements java.util.List<E>)
    • info.bioinfweb.commons.collections.observable.ObservableList<E>
  • info.bioinfweb.commons.collections.ListIteratorDecorator<E> (implements java.util.ListIterator<E>)
  • info.bioinfweb.commons.LongIDManager
  • info.bioinfweb.commons.bio.biojava3.core.sequence.io.MapFastaWriter<S>
  • info.bioinfweb.commons.Math2
  • info.bioinfweb.commons.io.streammessage.Message<T>
  • info.bioinfweb.commons.io.streammessage.MessageReader<T>
  • info.bioinfweb.commons.log.MultipleApplicationLoggersAdapter (implements info.bioinfweb.commons.log.ApplicationLogger)
  • info.bioinfweb.commons.bio.alignment.pairwise.NeedlemanWunschAligner (implements info.bioinfweb.commons.bio.alignment.pairwise.PairwiseAligner)
  • org.biojavax.bio.phylo.io.nexus.NexusBlock.Abstract (implements org.biojavax.bio.phylo.io.nexus.NexusBlock)
    • info.bioinfweb.commons.bio.biojavax.bio.phylo.io.nexus.SetsBlock
  • org.biojavax.bio.phylo.io.nexus.NexusBlockBuilder.Abstract (implements org.biojavax.bio.phylo.io.nexus.NexusBlockBuilder)
    • info.bioinfweb.commons.bio.biojavax.bio.phylo.io.nexus.SetsBlockBuilder (implements org.biojavax.bio.phylo.io.nexus.NexusBlockBuilder, org.biojavax.bio.phylo.io.nexus.NexusBlockListener, info.bioinfweb.commons.bio.biojavax.bio.phylo.io.nexus.SetsBlockListener)
  • org.biojavax.bio.phylo.io.nexus.NexusBlockParser.Abstract (implements org.biojavax.bio.phylo.io.nexus.NexusBlockParser)
    • info.bioinfweb.commons.bio.biojavax.bio.phylo.io.nexus.SetsBlockParser
  • org.biojavax.bio.phylo.io.nexus.NexusFileListener.Abstract (implements org.biojavax.bio.phylo.io.nexus.NexusFileListener)
    • org.biojavax.bio.phylo.io.nexus.NexusFileBuilder
      • info.bioinfweb.commons.bio.biojavax.bio.phylo.io.nexus.CharSetNexusFileBuilder
  • info.bioinfweb.commons.collections.NonStoringCollection<E> (implements java.util.Collection<E>)
  • info.bioinfweb.commons.collections.NumberedStringsIterator (implements java.util.Iterator<E>)
  • info.bioinfweb.commons.collections.PackedIntegerArrayList
  • info.bioinfweb.commons.io.PeekReader.ReadResult
  • info.bioinfweb.commons.ProgramMainClass
  • info.bioinfweb.commons.beans.PropertyChangeEventForwarder (implements java.beans.PropertyChangeListener)
  • info.bioinfweb.commons.servlet.acceptlanguage.QualityComparator (implements java.util.Comparator<T>)
  • info.bioinfweb.commons.RandomValues
  • java.io.Reader (implements java.io.Closeable, java.lang.Readable)
    • info.bioinfweb.commons.io.LimitedReader
    • info.bioinfweb.commons.io.PeekReader (implements info.bioinfweb.commons.io.StreamLocationProvider)
  • info.bioinfweb.commons.swt.ScrolledCompositeSyncListener
  • javax.swing.ScrollPaneLayout (implements java.awt.LayoutManager, javax.swing.ScrollPaneConstants, java.io.Serializable)
    • org.jdesktop.swingx.scrollpaneselector.TweakedScrollPaneLayout
  • info.bioinfweb.commons.bio.biojava3.core.sequence.SequenceCompareUtils
  • info.bioinfweb.commons.collections.SequenceIntervalList<E> (implements java.util.Collection<E>)
  • info.bioinfweb.commons.collections.SequenceIntervalList.IntervalInformation
  • info.bioinfweb.commons.collections.SequenceIntervalPositionAdapterForComparable<T> (implements info.bioinfweb.commons.collections.SequenceIntervalPositionAdapter<T>)
  • org.biojava3.core.sequence.template.SequenceProxyView<C> (implements org.biojava3.core.sequence.template.SequenceView<C>)
    • info.bioinfweb.commons.bio.biojava3.core.sequence.views.RemoveSequenceView<C> (implements org.biojava3.core.sequence.template.SequenceView<C>)
      • info.bioinfweb.commons.bio.biojava3.core.sequence.views.RemovedCharSetSequenceView<C> (implements org.biojava3.core.sequence.template.SequenceView<C>)
      • info.bioinfweb.commons.bio.biojava3.core.sequence.views.UnalignedSequenceView<C> (implements org.biojava3.core.sequence.template.SequenceView<C>)
    • info.bioinfweb.commons.bio.biojava3.core.sequence.views.ReplaceNucleotideSequenceView (implements info.bioinfweb.commons.bio.biojava3.core.sequence.views.CountableSequenceView, org.biojava3.core.sequence.template.SequenceView<C>)
      • info.bioinfweb.commons.bio.biojava3.core.sequence.views.ReplaceAbstractSequenceView
    • info.bioinfweb.commons.bio.biojava3.core.sequence.views.UpperCaseSequenceView<C> (implements info.bioinfweb.commons.bio.biojava3.core.sequence.views.CountableSequenceView, org.biojava3.core.sequence.template.SequenceView<C>)
  • info.bioinfweb.commons.bio.SequenceUtils
  • info.bioinfweb.commons.servlet.ServletUtils
  • info.bioinfweb.commons.bio.biojava3.alignment.SimpleAlignment<S,C> (implements info.bioinfweb.commons.bio.biojava3.alignment.template.Alignment<S,C>)
  • info.bioinfweb.commons.collections.SimpleSequenceInterval (implements java.lang.Comparable<T>)
  • info.bioinfweb.commons.collections.SimpleSequenceIntervalFirstPosComparator (implements java.util.Comparator<T>)
  • info.bioinfweb.commons.collections.SimpleSequenceIntervalLastPosComparator (implements java.util.Comparator<T>)
  • info.bioinfweb.commons.collections.SimpleSequenceIntervalPositionAdapter (implements info.bioinfweb.commons.collections.SequenceIntervalPositionAdapter<T>)
  • info.bioinfweb.commons.sql.SQLConnector
  • info.bioinfweb.commons.servlet.SQLManipulator
  • info.bioinfweb.commons.sql.SQLUtils
  • info.bioinfweb.commons.sql.sqlproperties.SQLXMLReader (implements info.bioinfweb.commons.sql.sqlproperties.SQLXMLConstants)
  • info.bioinfweb.commons.io.StreamLocation (implements info.bioinfweb.commons.io.StreamLocationProvider)
  • info.bioinfweb.commons.io.StreamLocationProviderOffsetComparator (implements java.util.Comparator<T>)
  • info.bioinfweb.commons.text.StringUtils
  • info.bioinfweb.commons.tokenizer.StrToken
  • info.bioinfweb.commons.tokenizer.StrTokenizer
  • info.bioinfweb.commons.swing.SwingSaverMessages
  • info.bioinfweb.commons.swing.SwingUtils
  • info.bioinfweb.commons.swt.SWTUtils
  • info.bioinfweb.commons.swing.SystemBrowserHyperlinkListener (implements javax.swing.event.HyperlinkListener)
  • org.apache.commons.lang3.SystemUtils
    • info.bioinfweb.commons.SystemUtils
  • info.bioinfweb.commons.swing.TableColumnModelAdapter (implements javax.swing.event.TableColumnModelListener)
  • info.bioinfweb.commons.io.TableReader
  • info.bioinfweb.commons.testing.TestLogger
  • info.bioinfweb.commons.testing.TestTools
  • info.bioinfweb.commons.io.TextReader
  • java.lang.Throwable (implements java.io.Serializable)
    • java.lang.Exception
      • info.bioinfweb.commons.io.InvalidXSDPathException
      • java.lang.RuntimeException
        • info.bioinfweb.commons.servlet.DatabaseException
        • java.lang.IllegalStateException
          • info.bioinfweb.commons.io.ClosingNotAllowedException
        • java.lang.IndexOutOfBoundsException
          • info.bioinfweb.commons.collections.bitstorage.exception.BitIndexOutOfBoundException (implements info.bioinfweb.commons.collections.bitstorage.exception.BitStorageException)
        • info.bioinfweb.commons.collections.bitstorage.exception.InvalidBitNumberForPrimitiveException (implements info.bioinfweb.commons.collections.bitstorage.exception.BitStorageException)
        • info.bioinfweb.commons.io.streammessage.NewerMessageVersionException
  • info.bioinfweb.commons.graphics.UniqueColorLister
  • info.bioinfweb.commons.text.UniqueNameMap
  • info.bioinfweb.commons.text.UniqueNameMapParameters
  • info.bioinfweb.commons.log.VoidApplicationLogger (implements info.bioinfweb.commons.log.ApplicationLogger)
  • info.bioinfweb.commons.testing.XMLAssert
  • info.bioinfweb.commons.io.XMLUtils
  • info.bioinfweb.commons.graphics.ZoomableFont

Interface Hierarchy

• info.bioinfweb.commons.bio.biojava3.alignment.template.Alignment<S,C>
• info.bioinfweb.commons.bio.biojava3.alignment.io.AlignmentReader<S,C>
• info.bioinfweb.commons.bio.biojava3.alignment.io.AlignmentWriter<S,C>
• info.bioinfweb.commons.log.ApplicationLogger
• info.bioinfweb.commons.collections.bitstorage.BitField
• info.bioinfweb.commons.collections.bitstorage.exception.BitStorageException
• info.bioinfweb.commons.changemonitor.ChangeMonitorable
  • info.bioinfweb.commons.io.Savable
    • info.bioinfweb.commons.swing.SwingSavable
  • info.bioinfweb.commons.swing.SwingSavable
• java.util.Comparator<T>
  • info.bioinfweb.commons.collections.SequenceIntervalPositionAdapter<T>
• info.bioinfweb.commons.bio.biojava3.core.sequence.views.CountableSequenceView
• java.util.EventListener
  • info.bioinfweb.commons.collections.observable.ListChangeListener<E>
• info.bioinfweb.commons.io.IOProgressListener
• org.biojavax.bio.phylo.io.nexus.NexusBlockListener
  • info.bioinfweb.commons.bio.biojavax.bio.phylo.io.nexus.SetsBlockListener
• info.bioinfweb.commons.bio.alignment.pairwise.PairwiseAligner
• info.bioinfweb.commons.progress.ProgressMonitor
• info.bioinfweb.commons.swing.scrollpaneselector.ScrollPaneSelectable
• info.bioinfweb.commons.sql.sqlproperties.SQLProperties
• info.bioinfweb.commons.sql.sqlproperties.SQLXMLConstants
• info.bioinfweb.commons.io.StreamLocationProvider
• info.bioinfweb.commons.io.W3CXSConstants

Enum Hierarchy

• java.lang.Object
  • java.lang.Enum<E> (implements java.lang.Comparable<T>, java.io.Serializable)
    • info.bioinfweb.commons.bio.CharacterStateSetType
    • info.bioinfweb.commons.bio.CharacterSymbolMeaning
    • info.bioinfweb.commons.bio.CharacterSymbolType
    • info.bioinfweb.commons.appversion.ApplicationType
    • info.bioinfweb.commons.collections.ListChangeType
    • info.bioinfweb.commons.io.ContentExtensionFileFilter.TestStrategy
    • info.bioinfweb.commons.log.ApplicationLoggerMessageType