info.bioinfweb.commons.bio.biojava3.core.sequence.compound

Class NoGapDNACompoundSet

java.lang.Object

org.biojava3.core.sequence.template.AbstractCompoundSet<C>

org.biojava3.core.sequence.template.AbstractNucleotideCompoundSet<org.biojava3.core.sequence.compound.NucleotideCompound>

info.bioinfweb.commons.bio.biojava3.core.sequence.template.AbstractNucleotideCompoundSet2

info.bioinfweb.commons.bio.biojava3.core.sequence.compound.NoGapDNACompoundSet

All Implemented Interfaces:

org.biojava3.core.sequence.template.CompoundSet<org.biojava3.core.sequence.compound.NucleotideCompound>

Direct Known Subclasses:

AmbiguityNoGapDNACompoundSet, AmbiguityNoGapRNACompoundSet

public class NoGapDNACompoundSet
extends AbstractNucleotideCompoundSet2

Nucleotide compound set that contains all DNA compounds but no gap - character (and without N). (DNACompoundSet contains both these symbols.)

Since:

build 10

Author:

Ben Stöver

Constructor Summary

Constructors

Constructor and Description
NoGapDNACompoundSet() Returns a new instance of this class.

Method Summary

Modifier and Type	Method and Description
static NoGapDNACompoundSet	getNoGapDNACompoundSet() Returns a shared instance of this class.

Methods inherited from class info.bioinfweb.commons.bio.biojava3.core.sequence.template.AbstractNucleotideCompoundSet2

addAmbiguityDNACompounds, addAmbiguityDNARNACompounds, addAmbiguityRNACompounds, newNucleotideCompound

Methods inherited from class org.biojava3.core.sequence.template.AbstractNucleotideCompoundSet

addNucleotideCompound, calculateIndirectAmbiguities, getAmbiguity, isComplementable

Methods inherited from class org.biojava3.core.sequence.template.AbstractCompoundSet

addCompound, addCompound, addCompound, addEquivalent, compoundsEqual, compoundsEquivalent, equals, getAllCompounds, getCompoundForString, getEquivalentCompounds, getMaxSingleCompoundStringLength, getStringForCompound, hasCompound, hashCode, isCompoundStringLengthEqual, verifySequence

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

NoGapDNACompoundSet

public NoGapDNACompoundSet()

Returns a new instance of this class.

Method Detail

getNoGapDNACompoundSet

public static NoGapDNACompoundSet getNoGapDNACompoundSet()

Returns a shared instance of this class.