public abstract class AbstractNucleotideCompoundSet2 extends org.biojava3.core.sequence.template.AbstractNucleotideCompoundSet<org.biojava3.core.sequence.compound.NucleotideCompound>
info.bioinfweb.biojavax
.
Implements newNucleotideCompound(String, String, String...)
.Constructor and Description |
---|
AbstractNucleotideCompoundSet2() |
Modifier and Type | Method and Description |
---|---|
protected void |
addAmbiguityDNACompounds() |
protected void |
addAmbiguityDNARNACompounds() |
protected void |
addAmbiguityRNACompounds() |
org.biojava3.core.sequence.compound.NucleotideCompound |
newNucleotideCompound(java.lang.String base,
java.lang.String complement,
java.lang.String... equivalents)
Creates a new nucleotide compound.
|
addNucleotideCompound, calculateIndirectAmbiguities, getAmbiguity, isComplementable
addCompound, addCompound, addCompound, addEquivalent, compoundsEqual, compoundsEquivalent, equals, getAllCompounds, getCompoundForString, getEquivalentCompounds, getMaxSingleCompoundStringLength, getStringForCompound, hasCompound, hashCode, isCompoundStringLengthEqual, verifySequence
public AbstractNucleotideCompoundSet2()
public org.biojava3.core.sequence.compound.NucleotideCompound newNucleotideCompound(java.lang.String base, java.lang.String complement, java.lang.String... equivalents)
DNACompoundSet
).newNucleotideCompound
in class org.biojava3.core.sequence.template.AbstractNucleotideCompoundSet<org.biojava3.core.sequence.compound.NucleotideCompound>
base
- the name of the base (e.g. A)complement
- the name of the complementary base (e.g. T)equivalents
- the bases represented by base
if base
and complement
are ambiguity codesAbstractNucleotideCompoundSet.newNucleotideCompound(java.lang.String, java.lang.String, java.lang.String[])
protected void addAmbiguityDNACompounds()
protected void addAmbiguityRNACompounds()
protected void addAmbiguityDNARNACompounds()