public class AlignmentAmbiguityDNACompoundSet extends AmbiguityNoGapDNACompoundSet
AlignmentAmbiguityDNACompoundSet
that also includes the ?
character.Constructor and Description |
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AlignmentAmbiguityDNACompoundSet()
Returns a new instance of this class.
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Modifier and Type | Method and Description |
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static AlignmentAmbiguityDNACompoundSet |
getAlignmentAmbiguityDNACompoundSet()
Returns a shared instance of this class.
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getAmbiguityNoGapDNACompoundSet
getNoGapDNACompoundSet
addAmbiguityDNACompounds, addAmbiguityDNARNACompounds, addAmbiguityRNACompounds, newNucleotideCompound
addNucleotideCompound, calculateIndirectAmbiguities, getAmbiguity, isComplementable
addCompound, addCompound, addCompound, addEquivalent, compoundsEqual, compoundsEquivalent, equals, getAllCompounds, getCompoundForString, getEquivalentCompounds, getMaxSingleCompoundStringLength, getStringForCompound, hasCompound, hashCode, isCompoundStringLengthEqual, verifySequence
public AlignmentAmbiguityDNACompoundSet()
public static AlignmentAmbiguityDNACompoundSet getAlignmentAmbiguityDNACompoundSet()