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B

beforeAdd(int, Collection<? extends E>) - Method in class info.bioinfweb.commons.collections.ListDecorator

This method is called at the beginning of all methods of this list that add elements to it (including methods called on the results of ListDecorator.subList(int, int) or iterators) before the actual inserting happens.

beforeAdd(int, E) - Method in class info.bioinfweb.commons.collections.ListIteratorDecorator

This method is called at the beginning of ListIteratorDecorator.add(Object) to indicate that an element will be inserted.

beforeAdd(int, Collection<? extends E>) - Method in class info.bioinfweb.commons.collections.observable.ObservableList

beforeElementReplaced(ListReplaceEvent<E>) - Method in class info.bioinfweb.commons.collections.observable.ListChangeAdapter

Empty implementation to be overwritten if necessary.

beforeElementReplaced(ListReplaceEvent<E>) - Method in interface info.bioinfweb.commons.collections.observable.ListChangeListener

Called before an element in the monitored list will be replaced by another one.

beforeElementsAdded(ListAddEvent<E>) - Method in class info.bioinfweb.commons.collections.observable.ListChangeAdapter

Empty implementation to be overwritten if necessary.

beforeElementsAdded(ListAddEvent<E>) - Method in interface info.bioinfweb.commons.collections.observable.ListChangeListener

Called before one or more elements are added to monitored list.

beforeElementsRemoved(ListRemoveEvent<E, Object>) - Method in class info.bioinfweb.commons.collections.observable.ListChangeAdapter

Empty implementation to be overwritten if necessary.

beforeElementsRemoved(ListRemoveEvent<E, Object>) - Method in interface info.bioinfweb.commons.collections.observable.ListChangeListener

Called before one or more elements will be removed from monitored list.

beforeRemove(int, Collection<Object>) - Method in class info.bioinfweb.commons.collections.ListDecorator

This method is called at the beginning of all methods of this list that remove elements from it (including methods called on the results of ListDecorator.subList(int, int) or iterators) before the actual deletion happens.

beforeRemove(int, Object) - Method in class info.bioinfweb.commons.collections.ListIteratorDecorator

This method is called at the beginning of ListIteratorDecorator.remove() to indicate that an element will be removed from the associated list.

beforeRemove(int, Collection<Object>) - Method in class info.bioinfweb.commons.collections.observable.ObservableList

beforeReplace(int, E, E) - Method in class info.bioinfweb.commons.collections.ListDecorator

This method is called at the beginning of ListDecorator.set(int, Object) to indicate that an element will be replaced.

beforeReplace(int, E, E) - Method in class info.bioinfweb.commons.collections.ListIteratorDecorator

This method is called at the beginning of ListIteratorDecorator.set(Object) to indicate that an element will be replaced.

beforeReplace(int, E, E) - Method in class info.bioinfweb.commons.collections.observable.ObservableList

BETA_STRING - Static variable in enum info.bioinfweb.commons.appversion.ApplicationType

BioinfwebMainPageAction - Class in info.bioinfweb.commons.swing.actions

BioinfwebMainPageAction() - Constructor for class info.bioinfweb.commons.swing.actions.BioinfwebMainPageAction

BioJava1SymbolTranslator - Class in info.bioinfweb.commons.bio.biojava3.core.sequence

Tool class that converts AtomicSymbol instances from BioJava 1 to Compound instances used in BioJava 3.

BioJava1SymbolTranslator() - Constructor for class info.bioinfweb.commons.bio.biojava3.core.sequence.BioJava1SymbolTranslator

BitField - Interface in info.bioinfweb.commons.collections.bitstorage

Interface that allows to read and write primitive data types from and to a field of bits.

BitIndexOutOfBoundException - Exception in info.bioinfweb.commons.collections.bitstorage.exception

Exception that is thrown if a bit index of a BitField is used which lies outside the current size of that field.

BitIndexOutOfBoundException(String, BitField, long) - Constructor for exception info.bioinfweb.commons.collections.bitstorage.exception.BitIndexOutOfBoundException

Creates a new instance of this class.

BitStorageException - Interface in info.bioinfweb.commons.collections.bitstorage.exception

Exceptions thrown by an implementation of BitField should implement this interface.

blend(Color...) - Static method in class info.bioinfweb.commons.graphics.GraphicsUtils

Blends different colors.

BLOCK_BITS - Static variable in class info.bioinfweb.commons.collections.PackedIntegerArrayList

BLOCK_SIZE - Static variable in class info.bioinfweb.commons.collections.PackedIntegerArrayList

brightnessDifference(Color, Color) - Static method in class info.bioinfweb.commons.graphics.GraphicsUtils

Returns the sum of the absolute differences the three channels of the two colors.

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