- W3CXSConstants - Interface in info.bioinfweb.commons.io
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- whichIsNext(String[]) - Method in class info.bioinfweb.commons.io.PeekReader
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Determines which of the specified strings is located at the current position of this reader.
- WHITESPACE_REPLACEMENT - Static variable in class info.bioinfweb.commons.bio.biojava3.alignment.io.AbstractAlignmentWriter
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- WHITESPACE_REPLACEMENT - Static variable in class info.bioinfweb.commons.bio.biojava3.alignment.io.hennig86.Hennig86Writer
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- WrapLayout - Class in info.bioinfweb.commons.swing
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FlowLayout subclass that fully supports wrapping of components.
- WrapLayout() - Constructor for class info.bioinfweb.commons.swing.WrapLayout
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Constructs a new WrapLayout with a left
alignment and a default 5-unit horizontal and vertical gap.
- WrapLayout(int) - Constructor for class info.bioinfweb.commons.swing.WrapLayout
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Constructs a new FlowLayout with the specified
alignment and a default 5-unit horizontal and vertical gap.
- WrapLayout(int, int, int) - Constructor for class info.bioinfweb.commons.swing.WrapLayout
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Creates a new flow layout manager with the indicated alignment
and the indicated horizontal and vertical gaps.
- write(XMLStreamWriter, ApplicationVersion) - Static method in class info.bioinfweb.commons.appversion.AppVersionXMLReadWrite
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Writes an XML tag representing the specified application version.
- write(Alignment<S, C>, File) - Method in class info.bioinfweb.commons.bio.biojava3.alignment.io.AbstractAlignmentWriter
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- write(Alignment<S, C>, OutputStream) - Method in interface info.bioinfweb.commons.bio.biojava3.alignment.io.AlignmentWriter
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- write(Alignment<S, C>, File) - Method in interface info.bioinfweb.commons.bio.biojava3.alignment.io.AlignmentWriter
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- write(Alignment<S, C>, OutputStream) - Method in class info.bioinfweb.commons.bio.biojava3.alignment.io.fasta.FastaWriter
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- write(Alignment<S, C>, OutputStream) - Method in class info.bioinfweb.commons.bio.biojava3.alignment.io.hennig86.Hennig86Writer
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- write(Alignment<S, C>, File, String) - Method in class info.bioinfweb.commons.bio.biojava3.alignment.io.hennig86.Hennig86Writer
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- write(Alignment<S, C>, OutputStream, String) - Method in class info.bioinfweb.commons.bio.biojava3.alignment.io.hennig86.Hennig86Writer
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- write(Alignment<S, C>, OutputStream) - Method in class info.bioinfweb.commons.bio.biojava3.alignment.io.mega.MEGAWriter
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- write(Alignment<S, C>, File, String) - Method in class info.bioinfweb.commons.bio.biojava3.alignment.io.mega.MEGAWriter
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- write(Alignment<S, C>, OutputStream, String) - Method in class info.bioinfweb.commons.bio.biojava3.alignment.io.mega.MEGAWriter
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- write(Alignment<S, C>, OutputStream) - Method in class info.bioinfweb.commons.bio.biojava3.alignment.io.nexus.NexusWriter
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- write(Alignment<S, C>, OutputStream) - Method in class info.bioinfweb.commons.bio.biojava3.alignment.io.phylip.PhylipWriter
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Writes the specified alignment in sequential Phylip format.
- write(File, Map<String, S>) - Method in class info.bioinfweb.commons.bio.biojava3.core.sequence.io.MapFastaWriter
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- write(OutputStream, Map<String, S>) - Method in class info.bioinfweb.commons.bio.biojava3.core.sequence.io.MapFastaWriter
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- write(DataOutputStream) - Method in class info.bioinfweb.commons.io.streammessage.Message
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Writes the message type and version to the stream.
- writeAttribute(XMLStreamWriter, QName, String) - Static method in class info.bioinfweb.commons.io.XMLUtils
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Writes an attribute with a name defined by a QName to an XMLStreamWriter.
- writeBlockContents(Writer) - Method in class info.bioinfweb.commons.bio.biojavax.bio.phylo.io.nexus.SetsBlock
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The implementation of this method is empty since it is not used in HIR-Finder.
- writeBoolean(boolean, long) - Method in interface info.bioinfweb.commons.collections.bitstorage.BitField
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Sets the bit at the specified position according the specified boolean value.
- writeByte(byte, long, long) - Method in interface info.bioinfweb.commons.collections.bitstorage.BitField
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- writeInt(int, long, long) - Method in interface info.bioinfweb.commons.collections.bitstorage.BitField
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- writeLong(long, long, long) - Method in interface info.bioinfweb.commons.collections.bitstorage.BitField
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- writeNameMap(OutputStream) - Method in class info.bioinfweb.commons.text.UniqueNameMap
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Writes the contents of the current name map in text format as tab separated values.
- writeNameMap(File) - Method in class info.bioinfweb.commons.text.UniqueNameMap
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Writes the contents of the current name map in text format as tab separated values.
- writeNamespaceAttr(XMLStreamWriter, String) - Static method in class info.bioinfweb.commons.io.XMLUtils
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Adds the xmlns attribute to the start element which was last written to the specified
writer.
- writeNamespaceXSDAttr(XMLStreamWriter, String, String) - Static method in class info.bioinfweb.commons.io.XMLUtils
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Adds the attributes xmlns xmlns:xsi and xsi:schemaLocation
and the according values to the start element which was last written to the specified writer.
- writeShort(short, long, long) - Method in interface info.bioinfweb.commons.collections.bitstorage.BitField
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- writeStartElement(XMLStreamWriter, QName) - Static method in class info.bioinfweb.commons.io.XMLUtils
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Writes a start element defined by a QName to an XMLStreamWriter.
- writeUnsignedByte(byte, long, long) - Method in interface info.bioinfweb.commons.collections.bitstorage.BitField
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- writeUnsignedInt(int, long, long) - Method in interface info.bioinfweb.commons.collections.bitstorage.BitField
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- writeUnsignedLong(long, long, long) - Method in interface info.bioinfweb.commons.collections.bitstorage.BitField
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- writeUnsignedShort(short, long, long) - Method in interface info.bioinfweb.commons.collections.bitstorage.BitField
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