- randBigDecimal(BigDecimal, BigDecimal) - Static method in class info.bioinfweb.commons.RandomValues
-
Returns an equally distributed random BigDecimal
value.
- randBigInteger(BigInteger, BigInteger) - Static method in class info.bioinfweb.commons.RandomValues
-
Returns an equally distributed random BigInteger
value.
- randBigInteger(int) - Static method in class info.bioinfweb.commons.RandomValues
-
- randChars(String, int) - Static method in class info.bioinfweb.commons.RandomValues
-
Generates a string consisting of a random sequence of the specified characters.
- randDouble(double, double) - Static method in class info.bioinfweb.commons.RandomValues
-
Returns an equally distributed random double value.
- randFloat(float, float) - Static method in class info.bioinfweb.commons.RandomValues
-
Returns an equally distributed random float value.
- randHexForBits(int) - Static method in class info.bioinfweb.commons.RandomValues
-
- randHexForChars(int) - Static method in class info.bioinfweb.commons.RandomValues
-
Returns the string representation of a random hexadecimal value.
- randInt(int, int) - Static method in class info.bioinfweb.commons.RandomValues
-
Returns an equally distributed random integer value.
- randLong(long, long) - Static method in class info.bioinfweb.commons.RandomValues
-
Returns an equally distributed random long value.
- RandomValues - Class in info.bioinfweb.commons
-
Tool class that offers a set of methods generating random numbers and strings or performing
random operations on lists.
- RandomValues() - Constructor for class info.bioinfweb.commons.RandomValues
-
- randSequence(boolean, int, double, double, double) - Static method in class info.bioinfweb.commons.bio.SequenceUtils
-
Returns a sequence of random DNA or RNA characters.
- randSequence(boolean, int, double) - Static method in class info.bioinfweb.commons.bio.SequenceUtils
-
Returns a sequence of random DNA or RNA characters.
- RC_STRING - Static variable in enum info.bioinfweb.commons.appversion.ApplicationType
-
- reachElementEnd(XMLEventReader) - Static method in class info.bioinfweb.commons.io.XMLUtils
-
Reads all events from the XMLEventReader
until one more end element than start elements is found.
- reachElementEnd(XMLStreamReader) - Static method in class info.bioinfweb.commons.io.XMLUtils
-
Reads all events from the XMLStreamReader
until one more end element than start elements is found.
- read(StartElement) - Static method in class info.bioinfweb.commons.appversion.AppVersionXMLReadWrite
-
Reads an application version object from an XML stream.
- read(File) - Method in class info.bioinfweb.commons.bio.biojava3.alignment.io.AbstractAlignmentReader
-
- read(InputStream) - Method in interface info.bioinfweb.commons.bio.biojava3.alignment.io.AlignmentReader
-
- read(File) - Method in interface info.bioinfweb.commons.bio.biojava3.alignment.io.AlignmentReader
-
- read(InputStream) - Method in class info.bioinfweb.commons.bio.biojava3.alignment.io.fasta.FastaReader
-
- read(InputStream) - Method in class info.bioinfweb.commons.bio.biojava3.alignment.io.nexus.NexusReader
-
- read() - Method in class info.bioinfweb.commons.io.LimitedInputStream
-
Returns the next byte from the decorated stream or -1 if either the end of the decorated stream or the limit specified to
this stream have been reached.
- read(char[], int, int) - Method in class info.bioinfweb.commons.io.LimitedReader
-
- read(char[], int, int) - Method in class info.bioinfweb.commons.io.PeekReader
-
Copies the specified number of characters into the specified array.
- read(DataInputStream) - Method in class info.bioinfweb.commons.io.streammessage.Message
-
Reads the message version and than calls doRead
.
- read(DataInputStream) - Method in class info.bioinfweb.commons.io.streammessage.MessageReader
-
- read(Reader) - Method in class info.bioinfweb.commons.sql.sqlproperties.SQLXMLReader
-
- read(InputStream) - Method in class info.bioinfweb.commons.sql.sqlproperties.SQLXMLReader
-
- read(String) - Method in class info.bioinfweb.commons.sql.sqlproperties.SQLXMLReader
-
- read(File) - Method in class info.bioinfweb.commons.sql.sqlproperties.SQLXMLReader
-
- readBoolean(long) - Method in interface info.bioinfweb.commons.collections.bitstorage.BitField
-
Interprets the bit at the specified position as a boolean value.
- readBooleanAttr(StartElement, QName, boolean) - Static method in class info.bioinfweb.commons.io.XMLUtils
-
- readByte(long, long) - Method in interface info.bioinfweb.commons.collections.bitstorage.BitField
-
Reads a signed integer with the specified length and returns it as a byte
value.
- readChar() - Method in class info.bioinfweb.commons.io.PeekReader
-
Reads the next character.
- readCharactersAsBoolean(XMLEventReader) - Static method in class info.bioinfweb.commons.io.XMLUtils
-
Reads the characters from the next event of the XMLEventReader
a parses them as a boolean
value.
- readCharactersAsBoolean(XMLStreamReader) - Static method in class info.bioinfweb.commons.io.XMLUtils
-
Reads the characters from the next event of the XMLStreamReader
a parses them as a boolean
value.
- readCharactersAsDouble(XMLEventReader) - Static method in class info.bioinfweb.commons.io.XMLUtils
-
Reads the characters from the next event of the XMLEventReader
a parses them as a double
value.
- readCharactersAsDouble(XMLStreamReader) - Static method in class info.bioinfweb.commons.io.XMLUtils
-
Reads the characters from the next event of the XMLStreamReader
a parses them as a double
value.
- readCharactersAsFloat(XMLEventReader) - Static method in class info.bioinfweb.commons.io.XMLUtils
-
Reads the characters from the next event of the XMLEventReader
a parses them as a float
value.
- readCharactersAsFloat(XMLStreamReader) - Static method in class info.bioinfweb.commons.io.XMLUtils
-
Reads the characters from the next event of the XMLStreamReader
a parses them as a float
value.
- readCharactersAsInt(XMLEventReader) - Static method in class info.bioinfweb.commons.io.XMLUtils
-
Reads the characters from the next event of the XMLEventReader
a parses them as an int
value.
- readCharactersAsInt(XMLStreamReader) - Static method in class info.bioinfweb.commons.io.XMLUtils
-
Reads the characters from the next event of the XMLStreamReader
a parses them as a int
value.
- readCharactersAsLong(XMLEventReader) - Static method in class info.bioinfweb.commons.io.XMLUtils
-
Reads the characters from the next event of the XMLEventReader
a parses them as an long
value.
- readCharactersAsLong(XMLStreamReader) - Static method in class info.bioinfweb.commons.io.XMLUtils
-
Reads the characters from the next event of the XMLStreamReader
a parses them as a long
value.
- readCharactersAsString(XMLEventReader) - Static method in class info.bioinfweb.commons.io.XMLUtils
-
Reads the characters from the next event of the XMLEventReader
.
- readCharactersAsString(XMLStreamReader) - Static method in class info.bioinfweb.commons.io.XMLUtils
-
Reads the characters from the next event of the XMLStreamReader
.
- readColorAttr(StartElement, QName, Color) - Static method in class info.bioinfweb.commons.io.XMLUtils
-
- readDatabase(XMLEventReader, SQLProperties) - Static method in class info.bioinfweb.commons.sql.sqlproperties.SQLXMLReader
-
Reads information information about a database connection from a XML-document.
- readDNAAlignment(File) - Static method in class info.bioinfweb.commons.bio.biojava3.core.sequence.io.FastaReaderTools
-
Reads an alignment contained in a FASTA file.
- readDNAAlignment(InputStream) - Static method in class info.bioinfweb.commons.bio.biojava3.core.sequence.io.FastaReaderTools
-
Reads an alignment contained in a FASTA file.
- readDoubleAttr(StartElement, QName, double) - Static method in class info.bioinfweb.commons.io.XMLUtils
-
- readEnumSet(ResultSet, String, Class<E>) - Static method in class info.bioinfweb.commons.sql.SQLUtils
-
Reads a value of an SQL SET
column into an EnumSet
.
- readEnumSet(String, Class<E>) - Static method in class info.bioinfweb.commons.sql.SQLUtils
-
Reads a value of an SQL SET
column into an EnumSet
.
- readFloatAttr(StartElement, QName, float) - Static method in class info.bioinfweb.commons.io.XMLUtils
-
- readFromDB(String, String, String) - Method in class info.bioinfweb.commons.servlet.SQLManipulator
-
- readFromDB(String, String, String, String) - Method in class info.bioinfweb.commons.servlet.SQLManipulator
-
- readFromDB(String, int) - Method in class info.bioinfweb.commons.servlet.SQLManipulator
-
- readFromDB(String, String, int) - Method in class info.bioinfweb.commons.servlet.SQLManipulator
-
- readInt(long, long) - Method in interface info.bioinfweb.commons.collections.bitstorage.BitField
-
Reads a signed integer with the specified length and returns it as a int
value.
- readIntAttr(StartElement, QName, int) - Static method in class info.bioinfweb.commons.io.XMLUtils
-
- readIntParamList(HttpServletRequest, String) - Static method in class info.bioinfweb.commons.servlet.ServletUtils
-
Reads a set of integer values specified by GET or POST parameters.
- readLine() - Method in class info.bioinfweb.commons.io.PeekReader
-
Reads a line of text.
- readLine(int) - Method in class info.bioinfweb.commons.io.PeekReader
-
Reads a line of text with the specified maximum length.
- readLong(long, long) - Method in interface info.bioinfweb.commons.collections.bitstorage.BitField
-
Reads a signed integer with the specified length and returns it as a long
value.
- readRegExp(String, boolean) - Method in class info.bioinfweb.commons.io.PeekReader
-
Reads characters into a string buffer until the contents of this buffer match the specified pattern or the end
of the stream is reached.
- readRegExp(int, String, boolean) - Method in class info.bioinfweb.commons.io.PeekReader
-
Reads characters into a string buffer until the contents of this buffer match the specified pattern or the end
of the stream is reached or the maximum number of characters was read.
- readRegExp(Pattern, boolean) - Method in class info.bioinfweb.commons.io.PeekReader
-
Reads characters into a string buffer until the contents of this buffer match the specified pattern or the end
of the stream is reached.
- readRegExp(int, Pattern, boolean) - Method in class info.bioinfweb.commons.io.PeekReader
-
Reads characters into a string buffer until the contents of this buffer match the specified pattern or the end
of the stream is reached or the maximum number of characters was read.
- ReadResult(CharSequence, boolean) - Constructor for class info.bioinfweb.commons.io.PeekReader.ReadResult
-
Creates a new instance of this class
- readRootElement(InputStream) - Static method in class info.bioinfweb.commons.io.XMLUtils
-
Returns the root element of the XML file that can be read from the specified stream and closes it.
- readRootElement(File) - Static method in class info.bioinfweb.commons.io.XMLUtils
-
- readShort(long, long) - Method in interface info.bioinfweb.commons.collections.bitstorage.BitField
-
Reads a signed integer with the specified length and returns it as a short
value.
- readString(int) - Method in class info.bioinfweb.commons.io.PeekReader
-
Reads the specified number of characters and returns them as a string.
- readStringAttr(StartElement, QName, String) - Static method in class info.bioinfweb.commons.io.XMLUtils
-
- readTable(URL, char) - Static method in class info.bioinfweb.commons.io.TableReader
-
- readTable(File, char) - Static method in class info.bioinfweb.commons.io.TableReader
-
- readTable(InputStream, char) - Static method in class info.bioinfweb.commons.io.TableReader
-
Reads text data into a two dimensional array with String
objects.
- readText(URL) - Static method in class info.bioinfweb.commons.io.TextReader
-
- readText(File) - Static method in class info.bioinfweb.commons.io.TextReader
-
- readText(InputStream) - Static method in class info.bioinfweb.commons.io.TextReader
-
- readText(InputStream, int) - Static method in class info.bioinfweb.commons.io.TextReader
-
- readUnsignedByte(long, long) - Method in interface info.bioinfweb.commons.collections.bitstorage.BitField
-
Reads an unsigned integer with the specified length and returns it as a byte
value.
- readUnsignedInt(long, long) - Method in interface info.bioinfweb.commons.collections.bitstorage.BitField
-
Reads an unsigned integer with the specified length and returns it as a int
value.
- readUnsignedLong(long, long) - Method in interface info.bioinfweb.commons.collections.bitstorage.BitField
-
Reads an unsigned integer with the specified length and returns it as a long
value.
- readUnsignedShort(long, long) - Method in interface info.bioinfweb.commons.collections.bitstorage.BitField
-
Reads an unsigned integer with the specified length and returns it as a short
value.
- readUntil(String) - Method in class info.bioinfweb.commons.io.PeekReader
-
Reads characters into a string buffer until the specified termination sequence is found.
- readUntil(int, String) - Method in class info.bioinfweb.commons.io.PeekReader
-
Reads characters into a string buffer until the specified termination sequence is found or the end of the
stream is reached.
- readUntil(String[]) - Method in class info.bioinfweb.commons.io.PeekReader
-
- readUntil(int, String[]) - Method in class info.bioinfweb.commons.io.PeekReader
-
- readUntil(int, String[], boolean) - Method in class info.bioinfweb.commons.io.PeekReader
-
- readUntilWhitespace(int, String) - Method in class info.bioinfweb.commons.io.PeekReader
-
- readUntilWhitespace(String[]) - Method in class info.bioinfweb.commons.io.PeekReader
-
- readUntilWhitespace(int, String[]) - Method in class info.bioinfweb.commons.io.PeekReader
-
- ready() - Method in class info.bioinfweb.commons.io.LimitedReader
-
- redo() - Method in class info.bioinfweb.commons.swing.AbstractDocumentEdit
-
- redoCount() - Method in class info.bioinfweb.commons.swing.AccessibleUndoManager
-
- redoTo(UndoableEdit) - Method in class info.bioinfweb.commons.swing.AccessibleUndoManager
-
- registerChange() - Method in class info.bioinfweb.commons.changemonitor.ChangeMonitor
-
This method should be called of a change happened.
- registerChange() - Method in interface info.bioinfweb.commons.changemonitor.ChangeMonitorable
-
This method should be called of a change happened.
- registerDocumentChange() - Method in class info.bioinfweb.commons.swing.AbstractDocumentEdit
-
Inheriting classes should, e.g., inform document listeners here.
- registerToAll() - Method in class info.bioinfweb.commons.swt.ScrolledCompositeSyncListener
-
Registers this object as the selection listener at all according scroll bars of the specified
ScrolledComposite
s.
- RelativeRangeModel - Class in info.bioinfweb.commons.swing
-
- RelativeRangeModel() - Constructor for class info.bioinfweb.commons.swing.RelativeRangeModel
-
Constructs an instance of this class with a maximum factor of 10.
- RelativeRangeModel(int, double) - Constructor for class info.bioinfweb.commons.swing.RelativeRangeModel
-
- remove(int) - Method in class info.bioinfweb.commons.bio.biojava3.alignment.SimpleAlignment
-
- remove(String) - Method in class info.bioinfweb.commons.bio.biojava3.alignment.SimpleAlignment
-
- remove(int) - Method in interface info.bioinfweb.commons.bio.biojava3.alignment.template.Alignment
-
- remove(String) - Method in interface info.bioinfweb.commons.bio.biojava3.alignment.template.Alignment
-
- remove(int) - Method in class info.bioinfweb.commons.collections.ListDecorator
-
- remove(Object) - Method in class info.bioinfweb.commons.collections.ListDecorator
-
- remove() - Method in class info.bioinfweb.commons.collections.ListIteratorDecorator
-
- remove(Object) - Method in class info.bioinfweb.commons.collections.NonOverlappingIntervalList
-
Removes the specified object from this interval list.
- remove(int, int) - Method in class info.bioinfweb.commons.collections.NonOverlappingIntervalList
-
Removes the specified interval from this list.
- remove(Object) - Method in class info.bioinfweb.commons.collections.NonStoringCollection
-
Since no objects are stored in this collection, no objects can be removed.
- remove() - Method in class info.bioinfweb.commons.collections.NumberedStringsIterator
-
- remove(long) - Method in class info.bioinfweb.commons.collections.PackedIntegerArrayList
-
Removes the element at the specified position from this list.
- remove(int) - Method in class info.bioinfweb.commons.collections.PackedObjectArrayList
-
- remove(int) - Method in class info.bioinfweb.commons.collections.PackedPrimitiveWrapperArrayList
-
- remove(E) - Method in class info.bioinfweb.commons.collections.SequenceIntervalList.IntervalInformation
-
- remove(Object) - Method in class info.bioinfweb.commons.collections.SequenceIntervalList
-
- remove(IOProgressListener) - Method in class info.bioinfweb.commons.io.IOProgressListenerVector
-
- remove(Object) - Method in class info.bioinfweb.commons.swing.ActionMap
-
- remove(int) - Method in class info.bioinfweb.commons.swing.ListBackedListModel
-
- remove(Object) - Method in class info.bioinfweb.commons.text.UniqueNameMap
-
- removeAll(Collection<?>) - Method in class info.bioinfweb.commons.collections.ListDecorator
-
- removeAll(Collection<?>) - Method in class info.bioinfweb.commons.collections.NonStoringCollection
-
Since no objects are stored in this collection, no objects can be removed.
- removeAll(Collection<?>) - Method in class info.bioinfweb.commons.collections.SequenceIntervalList
-
- removeApplicationLogger() - Method in class info.bioinfweb.commons.log.ApplicationLoggerParameterMap
-
- removeBits(long, long) - Method in interface info.bioinfweb.commons.collections.bitstorage.BitField
-
Removes the specified number of bits from the specified position of the bit field and moves all bits
with indices >= start + numberOfBits
to the left.
- RemovedCharSetSequenceView<C extends org.biojava3.core.sequence.template.Compound> - Class in info.bioinfweb.commons.bio.biojava3.core.sequence.views
-
- RemovedCharSetSequenceView(Sequence<C>, Integer, Integer, NonOverlappingIntervalList) - Constructor for class info.bioinfweb.commons.bio.biojava3.core.sequence.views.RemovedCharSetSequenceView
-
- RemovedCharSetSequenceView(Sequence<C>, NonOverlappingIntervalList) - Constructor for class info.bioinfweb.commons.bio.biojava3.core.sequence.views.RemovedCharSetSequenceView
-
- removeFileChooser(JFileChooser) - Method in class info.bioinfweb.commons.swing.FileChooserDirModel
-
- removeFileExtention(String) - Method in class info.bioinfweb.commons.io.AbstractSaver
-
- removeFileExtention(String) - Method in interface info.bioinfweb.commons.io.Savable
-
- removeListChangeListener(ListChangeListener<E>) - Method in class info.bioinfweb.commons.collections.observable.ObservableList
-
Removes a listener from this list.
- removePropertyChangeListener(PropertyChangeListener) - Method in class info.bioinfweb.commons.graphics.ZoomableFont
-
- removePropertyChangeListener(String, PropertyChangeListener) - Method in class info.bioinfweb.commons.graphics.ZoomableFont
-
- removeRange(long, long) - Method in class info.bioinfweb.commons.collections.PackedIntegerArrayList
-
Removes the specified elements from this list.
- removeRange(int, int) - Method in class info.bioinfweb.commons.collections.PackedObjectArrayList
-
- removeRange(int, int) - Method in class info.bioinfweb.commons.collections.PackedPrimitiveWrapperArrayList
-
- RemoveSequenceView<C extends org.biojava3.core.sequence.template.Compound> - Class in info.bioinfweb.commons.bio.biojava3.core.sequence.views
-
- RemoveSequenceView(Sequence<C>, Integer, Integer) - Constructor for class info.bioinfweb.commons.bio.biojava3.core.sequence.views.RemoveSequenceView
-
- RemoveSequenceView(Sequence<C>) - Constructor for class info.bioinfweb.commons.bio.biojava3.core.sequence.views.RemoveSequenceView
-
- removeUpdate(DocumentEvent) - Method in class info.bioinfweb.commons.swing.SwingChangeMonitor
-
- renameRepeatedEntries(String[]) - Static method in class info.bioinfweb.commons.text.StringUtils
-
- renameRepeatedEntries(List<String>) - Static method in class info.bioinfweb.commons.text.StringUtils
-
- renameSequence(String, String) - Method in class info.bioinfweb.commons.bio.biojava3.alignment.SimpleAlignment
-
- renameSequence(String, String) - Method in interface info.bioinfweb.commons.bio.biojava3.alignment.template.Alignment
-
- renameSequences(UniqueNameMap) - Method in class info.bioinfweb.commons.bio.biojava3.alignment.SimpleAlignment
-
Changes the sequence names in this alignment according to the parameters of the specified name map
and stores in the old and new names in map.
- renameSequences(UniqueNameMap) - Method in interface info.bioinfweb.commons.bio.biojava3.alignment.template.Alignment
-
- repeat(CharSequence, int) - Static method in class info.bioinfweb.commons.text.StringUtils
-
- replace(String, S) - Method in class info.bioinfweb.commons.bio.biojava3.alignment.SimpleAlignment
-
- replace(int, S) - Method in class info.bioinfweb.commons.bio.biojava3.alignment.SimpleAlignment
-
- replace(String, S) - Method in interface info.bioinfweb.commons.bio.biojava3.alignment.template.Alignment
-
- replace(int, S) - Method in interface info.bioinfweb.commons.bio.biojava3.alignment.template.Alignment
-
- ReplaceAbstractSequenceView - Class in info.bioinfweb.commons.bio.biojava3.core.sequence.views
-
- ReplaceAbstractSequenceView(AbstractSequence<NucleotideCompound>, Map<NucleotideCompound, NucleotideCompound>) - Constructor for class info.bioinfweb.commons.bio.biojava3.core.sequence.views.ReplaceAbstractSequenceView
-
- replaceEdit(UndoableEdit) - Method in class info.bioinfweb.commons.swing.AbstractDocumentEdit
-
- ReplaceNucleotideSequenceView - Class in info.bioinfweb.commons.bio.biojava3.core.sequence.views
-
Sequence view that replaces some types of nucleotides with others according to a specified translation
map.
- ReplaceNucleotideSequenceView(Sequence<NucleotideCompound>, Map<NucleotideCompound, NucleotideCompound>) - Constructor for class info.bioinfweb.commons.bio.biojava3.core.sequence.views.ReplaceNucleotideSequenceView
-
- ReplaceNucleotideSequenceView(Sequence<NucleotideCompound>, Map<NucleotideCompound, NucleotideCompound>, Integer, Integer) - Constructor for class info.bioinfweb.commons.bio.biojava3.core.sequence.views.ReplaceNucleotideSequenceView
-
- rescale(double) - Method in class info.bioinfweb.commons.bio.AmbiguityBaseScore
-
Scales all scores with the same linear factor so that the sum of all scores is equal to sum
.
- rescaleToRect(BufferedImage, int, int, boolean) - Static method in class info.bioinfweb.commons.graphics.ImageRescaler
-
Rescales an image so that is fits to the specified rectangle (without changing the
aspect ratio).
- reset() - Method in class info.bioinfweb.commons.changemonitor.ChangeMonitor
-
- reset() - Method in interface info.bioinfweb.commons.changemonitor.ChangeMonitorable
-
- reset() - Method in class info.bioinfweb.commons.io.LimitedInputStream
-
- reset() - Method in class info.bioinfweb.commons.io.LimitedReader
-
- reset() - Method in class info.bioinfweb.commons.io.PeekReader
-
- resetStatus() - Method in class info.bioinfweb.commons.bio.biojavax.bio.phylo.io.nexus.SetsBlockParser
-
- resize(Dimension) - Method in class info.bioinfweb.commons.applet.DoubleBufferedApplet
-
- resize(int, int) - Method in class info.bioinfweb.commons.applet.DoubleBufferedApplet
-
- retainAll(Collection<?>) - Method in class info.bioinfweb.commons.collections.ListDecorator
-
- retainAll(Collection<?>) - Method in class info.bioinfweb.commons.collections.NonStoringCollection
-
Since no objects are stored in this collection, no objects can be removed.
- retainAll(Collection<?>) - Method in class info.bioinfweb.commons.collections.SequenceIntervalList
-
- reverse(CharSequence) - Static method in class info.bioinfweb.commons.bio.SequenceUtils
-
Returns the reverse of the specified sequence.
- reverseComplement(CharSequence) - Static method in class info.bioinfweb.commons.bio.SequenceUtils
-
Returns the reverse complemented sequence.
- rgbToGrayColor(Color) - Static method in class info.bioinfweb.commons.graphics.GraphicsUtils
-
Returns the according gray scale color to the specified color.
- rgbToGrayValue(Color) - Static method in class info.bioinfweb.commons.graphics.GraphicsUtils
-
Returns the according gray scale value to the specified color.
- rightSubsequence(String, int) - Static method in class info.bioinfweb.commons.bio.SequenceUtils
-
Returns the right subsequence with the specified length (which does not include gaps).
- RNA_CHARS - Static variable in class info.bioinfweb.commons.bio.SequenceUtils
-
- RNA_TO_DNA_MAP - Static variable in class info.bioinfweb.commons.bio.biojava3.core.sequence.views.ReplaceNucleotideSequenceView
-
Replaces U with T.
- rnaConstituents(char) - Static method in class info.bioinfweb.commons.bio.SequenceUtils
-
- rnaToDNA(String) - Static method in class info.bioinfweb.commons.bio.SequenceUtils
-
- roundBigDecimal(BigDecimal, RoundingMode) - Static method in class info.bioinfweb.commons.Math2
-
- roundBigDecimalToBigInteger(BigDecimal, RoundingMode) - Static method in class info.bioinfweb.commons.Math2
-
- roundFirstSignificantDigit(double) - Static method in class info.bioinfweb.commons.Math2
-
Rounds a double value at the given first significant digit.
- roundFirstSignificantDigit(float) - Static method in class info.bioinfweb.commons.Math2
-
Rounds a float value at the given first significant digit.
- roundSignificantDigit(double, int) - Static method in class info.bioinfweb.commons.Math2
-
Rounds a double value at the given significant digit.
- roundSignificantDigit(float, int) - Static method in class info.bioinfweb.commons.Math2
-
Rounds a float value at the given significant digit.
- roundUp(double) - Static method in class info.bioinfweb.commons.Math2
-
Returns the next integer value that is greater or equal to the specified value.
- roundUp(float) - Static method in class info.bioinfweb.commons.Math2
-
Returns the next integer value that is greater or equal to the specified value.