- UnalignedSequenceView<C extends org.biojava3.core.sequence.template.Compound> - Class in info.bioinfweb.commons.bio.biojava3.core.sequence.views
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Implementation of the SequenceView interface which provides access
to an aligned sequence (with gaps) as if it would be unaligned (without
gaps).
- UnalignedSequenceView(Sequence<C>, CompoundSet<C>, Integer, Integer) - Constructor for class info.bioinfweb.commons.bio.biojava3.core.sequence.views.UnalignedSequenceView
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Creates a new instance of this class.
- UnalignedSequenceView(Sequence<C>, CompoundSet<C>) - Constructor for class info.bioinfweb.commons.bio.biojava3.core.sequence.views.UnalignedSequenceView
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Creates a new instance of this class.
- undo() - Method in class info.bioinfweb.commons.swing.AbstractDocumentEdit
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- undoCount() - Method in class info.bioinfweb.commons.swing.AccessibleUndoManager
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- undoTo(UndoableEdit) - Method in class info.bioinfweb.commons.swing.AccessibleUndoManager
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- uninstallScrollPaneSelector(JScrollPane) - Static method in class info.bioinfweb.commons.swing.scrollpaneselector.ExtendedScrollPaneSelector
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Removes the ScrollPaneSelector from the given JScrollPane.
- uninstallScrollPaneSelector(JScrollPane) - Static method in class org.jdesktop.swingx.scrollpaneselector.ScrollPaneSelector
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Removes the ScrollPaneSelector from the given JScrollPane.
- UniqueColorLister - Class in info.bioinfweb.commons.graphics
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Allows to subsequently generate a list of unique colors that are equally distributed along the spectrum.
- UniqueColorLister() - Constructor for class info.bioinfweb.commons.graphics.UniqueColorLister
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- UniqueNameMap - Class in info.bioinfweb.commons.text
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- UniqueNameMap(UniqueNameMapParameters) - Constructor for class info.bioinfweb.commons.text.UniqueNameMap
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- UniqueNameMapParameters - Class in info.bioinfweb.commons.text
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- UniqueNameMapParameters() - Constructor for class info.bioinfweb.commons.text.UniqueNameMapParameters
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- UNKNOWN_CHARACTER - Static variable in class info.bioinfweb.commons.bio.biojava3.core.sequence.compound.AlignmentAmbiguityNucleotideCompoundSet
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- UNKNOWN_DNA_TO_N_RNA_MAP - Static variable in class info.bioinfweb.commons.bio.biojava3.core.sequence.views.ReplaceNucleotideSequenceView
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Replaces ? with N and T with U.
- UNKNOWN_RNA_TO_N_DNA_MAP - Static variable in class info.bioinfweb.commons.bio.biojava3.core.sequence.views.ReplaceNucleotideSequenceView
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Replaces ? with N and U with T.
- UNLIMITED_LENGTH - Static variable in class info.bioinfweb.commons.text.UniqueNameMapParameters
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- unmodifiableIterator(Iterator<E>) - Static method in class info.bioinfweb.commons.collections.CollectionUtils
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- update(Graphics) - Method in class info.bioinfweb.commons.applet.DoubleBufferedApplet
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- updateDBEntry(String, String, String, String, String) - Method in class info.bioinfweb.commons.servlet.SQLManipulator
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Updates one column in the specified database entries.
- updateDBEntry(String, String, String, String) - Method in class info.bioinfweb.commons.servlet.SQLManipulator
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Updates one column in the specified database entries.
- updateDBEntry(String, String, String, String[], Object[]) - Method in class info.bioinfweb.commons.servlet.SQLManipulator
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Updates several columns in the specified database entries.
- updateDBEntry(String, String, String[], Object[]) - Method in class info.bioinfweb.commons.servlet.SQLManipulator
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Updates several columns in the specified database entries.
- UpperCaseSequenceView<C extends org.biojava3.core.sequence.template.Compound> - Class in info.bioinfweb.commons.bio.biojava3.core.sequence.views
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- UpperCaseSequenceView(Sequence<C>, Integer, Integer, CompoundSet<? extends C>) - Constructor for class info.bioinfweb.commons.bio.biojava3.core.sequence.views.UpperCaseSequenceView
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- UpperCaseSequenceView(Sequence<C>, CompoundSet<? extends C>) - Constructor for class info.bioinfweb.commons.bio.biojava3.core.sequence.views.UpperCaseSequenceView
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