A B C D E F G H I J K L M N O P Q R S T U V W X Z

T

TableColumnModelAdapter - Class in info.bioinfweb.commons.swing

TableColumnModel.

TableColumnModelAdapter() - Constructor for class info.bioinfweb.commons.swing.TableColumnModelAdapter

TableReader - Class in info.bioinfweb.commons.io

Implements reading a table from a text file two a two dimensional array with String objects.

TableReader() - Constructor for class info.bioinfweb.commons.io.TableReader

TAG_APP_VERSION - Static variable in class info.bioinfweb.commons.appversion.AppVersionXMLConstants

TAG_DB - Static variable in interface info.bioinfweb.commons.sql.sqlproperties.SQLXMLConstants

TAG_DB_DRIVER - Static variable in interface info.bioinfweb.commons.sql.sqlproperties.SQLXMLConstants

TAG_DB_HOST - Static variable in interface info.bioinfweb.commons.sql.sqlproperties.SQLXMLConstants

TAG_DB_NAME - Static variable in interface info.bioinfweb.commons.sql.sqlproperties.SQLXMLConstants

TAG_DB_PASSWORD - Static variable in interface info.bioinfweb.commons.sql.sqlproperties.SQLXMLConstants

TAG_DB_USER - Static variable in interface info.bioinfweb.commons.sql.sqlproperties.SQLXMLConstants

TAG_PATTERN - Static variable in class info.bioinfweb.commons.HTMLTruncater

This pattern creates tokens, where each line starts with the tag.

TAG_TABLE_PREFIX - Static variable in interface info.bioinfweb.commons.sql.sqlproperties.SQLXMLConstants

TARGET_URL_PATTEEN - Static variable in class info.bioinfweb.commons.servlet.HTTPIncludeServlet

TestLogger - Class in info.bioinfweb.commons.testing

Logger class to be used in debugging and performance testing.

TestTools - Class in info.bioinfweb.commons.testing

Class that provides tools for JUnit testing.

TestTools() - Constructor for class info.bioinfweb.commons.testing.TestTools

TextFileApplicationLogger - Class in info.bioinfweb.commons.log

This implementation of ApplicationLogger appends all log messages to a text file, where every message is written to one line.

TextFileApplicationLogger(PrintWriter) - Constructor for class info.bioinfweb.commons.log.TextFileApplicationLogger

Creates a new instance of this class that writes into the specified writer instead of a file.

TextFileApplicationLogger(File, boolean) - Constructor for class info.bioinfweb.commons.log.TextFileApplicationLogger

Creates a new instance of this class and writes all messaged to the specified file.

TextFileApplicationLogger(File) - Constructor for class info.bioinfweb.commons.log.TextFileApplicationLogger

Creates a new instance of this class and appends all messaged to the specified file.

TextReader - Class in info.bioinfweb.commons.io

Offers methods that read the whole content of a text file and return it as a string.

TextReader() - Constructor for class info.bioinfweb.commons.io.TextReader

threeLetterAminoAcidByOneLetter(char) - Static method in class info.bioinfweb.commons.bio.SequenceUtils

Converts the specified one letter amino acid code into a three letter representation.

threeLetterAminoAcidConstituents(String) - Static method in class info.bioinfweb.commons.bio.SequenceUtils

Returns the three letter amino acid representations of all compounds that could be represented by the specified ambiguity code.

THYMINE_INDEX - Static variable in class info.bioinfweb.commons.bio.AmbiguityBaseScore

tileHorizontal(int) - Method in class info.bioinfweb.commons.swing.ExtendedDesktopPane

tileHorizontal() - Method in class info.bioinfweb.commons.swing.ExtendedDesktopPane

tileVertical(int) - Method in class info.bioinfweb.commons.swing.ExtendedDesktopPane

tileVertical() - Method in class info.bioinfweb.commons.swing.ExtendedDesktopPane

TIME_FORMAT - Static variable in class info.bioinfweb.commons.log.ApplicationLoggerMessage

toArray() - Method in class info.bioinfweb.commons.collections.ListDecorator

toArray(T[]) - Method in class info.bioinfweb.commons.collections.ListDecorator

toArray() - Method in class info.bioinfweb.commons.collections.NonStoringCollection

toArray(Object[]) - Method in class info.bioinfweb.commons.collections.NonStoringCollection

toArray() - Method in class info.bioinfweb.commons.collections.SequenceIntervalList

toArray(T[]) - Method in class info.bioinfweb.commons.collections.SequenceIntervalList

toBinaryRepresentation(byte) - Static method in class info.bioinfweb.commons.testing.TestTools

Returns a string buffer containing the two's complement representation (consisting of 8 bits) of a byte value

toBinaryRepresentation(short) - Static method in class info.bioinfweb.commons.testing.TestTools

Returns a string buffer containing the two's complement representation (consisting of 16 bits) of a short value

toBinaryRepresentation(int) - Static method in class info.bioinfweb.commons.testing.TestTools

Returns a string buffer containing the two's complement representation (consisting of 32 bits) of an int value

toBinaryRepresentation(long) - Static method in class info.bioinfweb.commons.testing.TestTools

Returns a string buffer containing the two's complement representation (consisting of 64 bits) of a long value

toLocale() - Method in class info.bioinfweb.commons.servlet.acceptlanguage.AcceptLanguageEntry

ToolBarPopup - Class in info.bioinfweb.commons.swing

ToolBarPopup(Component) - Constructor for class info.bioinfweb.commons.swing.ToolBarPopup

ToolBarPopup(Component, Dialog) - Constructor for class info.bioinfweb.commons.swing.ToolBarPopup

ToolBarPopup(Component, Frame) - Constructor for class info.bioinfweb.commons.swing.ToolBarPopup

ToolBarPopup(Component, Window) - Constructor for class info.bioinfweb.commons.swing.ToolBarPopup

toString() - Method in enum info.bioinfweb.commons.appversion.ApplicationType

Returns the string representation of this instance.

toString() - Method in class info.bioinfweb.commons.appversion.ApplicationVersion

This method can be overriden if a special name is needed.

toString() - Method in class info.bioinfweb.commons.collections.SimpleSequenceInterval

toString() - Method in class info.bioinfweb.commons.io.FormatVersion

toString() - Method in class info.bioinfweb.commons.log.ApplicationLoggerMessage

truncateHTML(String, int, String) - Static method in class info.bioinfweb.commons.HTMLTruncater

truncateHTML(String, int) - Static method in class info.bioinfweb.commons.HTMLTruncater

TweakedScrollPaneLayout - Class in org.jdesktop.swingx.scrollpaneselector

A hideous hack to allow the display of the selector's button even when only one scrollBar is visible.

TweakedScrollPaneLayout() - Constructor for class org.jdesktop.swingx.scrollpaneselector.TweakedScrollPaneLayout

TwitterAction - Class in info.bioinfweb.commons.swing.actions

TwitterAction() - Constructor for class info.bioinfweb.commons.swing.actions.TwitterAction

A B C D E F G H I J K L M N O P Q R S T U V W X Z