- editUndoRedoMenus() - Method in class info.bioinfweb.commons.swing.AbstractUndoActionManagement
-
Sets the contents undo and redo menus or disables them.
- embedAWTComponent(Component, Composite) - Static method in class info.bioinfweb.commons.swt.SWTUtils
-
Creates a new Composite with an embedded AWT or Swing component.
- EMPTY_TAG_PATTERN - Static variable in class info.bioinfweb.commons.HTMLTruncater
-
Checks for an empty tag, for example img, br, etc.
- EN_ASK_TO_SAVE_MESSAGE_BEGINNING - Static variable in class info.bioinfweb.commons.swing.SwingSaverMessages
-
- EN_ASK_TO_SAVE_MESSAGE_END - Static variable in class info.bioinfweb.commons.swing.SwingSaverMessages
-
- EN_ASK_TO_SAVE_TITLE - Static variable in class info.bioinfweb.commons.swing.SwingSaverMessages
-
- EN_BUTTON_CANCEL - Static variable in class info.bioinfweb.commons.swing.SwingSaverMessages
-
- EN_BUTTON_NO - Static variable in class info.bioinfweb.commons.swing.SwingSaverMessages
-
- EN_BUTTON_YES - Static variable in class info.bioinfweb.commons.swing.SwingSaverMessages
-
- endBlock() - Method in class info.bioinfweb.commons.bio.biojavax.bio.phylo.io.nexus.SetsBlockBuilder
-
- endsWith(CharSequence, char) - Static method in class info.bioinfweb.commons.text.StringUtils
-
Tests whether a character sequence ends with a specified character.
- endsWithDefaultExt(String) - Method in class info.bioinfweb.commons.io.AbstractSaver
-
- endsWithDefaultExt(String) - Method in interface info.bioinfweb.commons.io.Savable
-
Tests if the given string ends with the default file extension.
- endsWithValidExt(String) - Method in class info.bioinfweb.commons.io.AbstractSaver
-
- endsWithValidExt(String) - Method in interface info.bioinfweb.commons.io.Savable
-
Tests if the given string ends with one of the valid file extensions stored.
- endTokenGroup() - Method in class info.bioinfweb.commons.bio.biojavax.bio.phylo.io.nexus.SetsBlockBuilder
-
- endTokenGroup() - Method in class info.bioinfweb.commons.bio.biojavax.bio.phylo.io.nexus.SetsBlockParser
-
- ensureCapacity(long) - Method in class info.bioinfweb.commons.collections.PackedIntegerArrayList
-
Makes sure that the underlying array can take up at least the specified number of elements.
- ENTITY_PATTERN - Static variable in class info.bioinfweb.commons.HTMLTruncater
-
Find > ...
- entrySet() - Method in class info.bioinfweb.commons.text.UniqueNameMap
-
- EOF - Static variable in class info.bioinfweb.commons.io.IOUtils
-
- equals(Object) - Method in class info.bioinfweb.commons.appversion.ApplicationVersion
-
Checks if two versions are equal.
- equals(Object) - Method in class info.bioinfweb.commons.bio.AmbiguityBaseScore
-
- equals(Object) - Method in class info.bioinfweb.commons.bio.biojava3.alignment.SimpleAlignment
-
Checks if this alignment contains the same sequences (name and sequence) and the same character sets
(names and positions) as the specified one.
- equals(Object) - Method in class info.bioinfweb.commons.collections.ListDecorator
-
- equals(Object) - Method in class info.bioinfweb.commons.collections.SimpleSequenceInterval
-
- equals(Object) - Method in class info.bioinfweb.commons.io.FormatVersion
-
Returns true if the passed object is an instance of this class and major and minor version equal
to the values of this instance.
- equals(Object) - Method in class info.bioinfweb.commons.io.StreamLocation
-
Note that this method will only return true, if the other object is also an instance
of this class or an inherited class.
- execute(String, String, double, String) - Method in class info.bioinfweb.commons.swing.DecimalInputDialog
-
- execute(String, String, long, String) - Method in class info.bioinfweb.commons.swing.DecimalInputDialog
-
- execute() - Method in class info.bioinfweb.commons.swing.OkCancelApplyDialog
-
- ExtendedAbstractAction - Class in info.bioinfweb.commons.swing
-
- ExtendedAbstractAction() - Constructor for class info.bioinfweb.commons.swing.ExtendedAbstractAction
-
Constructs an instance of this class with the default path prefix /resources/symbols/.
- ExtendedAbstractAction(String) - Constructor for class info.bioinfweb.commons.swing.ExtendedAbstractAction
-
Constructs an instance of this class with the specified path prefix.
- ExtendedDesktopPane - Class in info.bioinfweb.commons.swing
-
This class extends the JDesktopPane with the functionality of tiling
and cascading the internal frames.
- ExtendedDesktopPane() - Constructor for class info.bioinfweb.commons.swing.ExtendedDesktopPane
-
- ExtendedScrollPaneSelector - Class in info.bioinfweb.commons.swing.scrollpaneselector
-
ExtendedScrollPaneSelector is an extended implementation of
ScrollPaneSelector which is is a little utility class that provides a means to quickly
scroll both vertically and horizontally on a single mouse click, by dragging a selection rectangle
over a "thumbnail" of the scrollPane's viewport view.
- EXTENSION_SEPARATOR - Static variable in class info.bioinfweb.commons.io.ExtensionFileFilter
-
The character separating an extension from the file name.
- ExtensionFileFilter - Class in info.bioinfweb.commons.io
-
A file filter that both inherits from the Swing class FileFilter and implements
both the Java I/O interfaces FileFilter and FilenameFilter.
- ExtensionFileFilter(String, boolean, String...) - Constructor for class info.bioinfweb.commons.io.ExtensionFileFilter
-
Creates a new instance of this class.
- ExtensionFileFilter(String, boolean, List<String>) - Constructor for class info.bioinfweb.commons.io.ExtensionFileFilter
-
Creates a new instance of this class.
- extractDir(ZipFile, String, String, IOProgressListener) - Static method in class info.bioinfweb.commons.io.IOUtils
-
Extracts the contents of a directory from an archive (e.g.
- extractDir(ZipFile, String, String) - Static method in class info.bioinfweb.commons.io.IOUtils
-
Extracts the contents of a directory from an archive (e.g.
- extractFile(ZipFile, String, OutputStream, IOProgressListener) - Static method in class info.bioinfweb.commons.io.IOUtils
-
Extracts a file from an archive (e.g.
- extractFile(ZipFile, String, OutputStream) - Static method in class info.bioinfweb.commons.io.IOUtils
-
Extracts a file from an archive (e.g.
- extractFile(ZipFile, String, File, IOProgressListener) - Static method in class info.bioinfweb.commons.io.IOUtils
-
Extracts a file from an archive (e.g.
- extractFile(ZipFile, String, File) - Static method in class info.bioinfweb.commons.io.IOUtils
-
Extracts a file from an archive (e.g.
- extractFormatVersion(StartElement) - Static method in class info.bioinfweb.commons.io.XMLUtils
-
Extracts the format version from the xsi:schemaLocation attribute (e.g.
- extractIntIndexFromString(String, String) - Static method in class info.bioinfweb.commons.collections.NumberedStringsIterator
-
Extracts an index from a numbered string.
- extractLongIndexFromString(String, String) - Static method in class info.bioinfweb.commons.collections.NumberedStringsIterator
-
Extracts an index from a numbered string.
- extractXSDFileName(StartElement) - Static method in class info.bioinfweb.commons.io.XMLUtils
-
Extracts the XSD file name from the xsi:schemaLocation attribute (e.g.
